Browse Element(s) Details


OsAffx.23846.1.A1_at

Description tigr:9629.m05790
TID=OsAffx.23846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g485803/11ubiquitin-conjugating enzyme E2, putative
LOC_Os08g280703/11hypothetical protein
LOC_Os01g112001/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48530OsAffx.11519.1.S1_at11/111+28160739..28162530expressed protein
LOC_Os01g48530Os.41729.1.S1_s_at11/111+28160739..28162530expressed protein
LOC_Os01g48540Os.31637.1.S1_at11/111+28167053..28169239Glyoxal oxidase N-terminus family protein, expressed
LOC_Os01g48550Os.30611.1.S1_at11/111+28170241..28171723expressed protein
LOC_Os01g48560OsAffx.11520.1.S1_at11/111+28175351..28175718hypothetical protein
LOC_Os01g48570NANA1+28179313..28182845expressed protein
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48590NANA1+28192397..28192723hypothetical protein
LOC_Os01g48600OsAffx.32032.4.S1_s_at11/111+28193682..28194201CDS, putative
LOC_Os01g48610Os.26755.1.S1_at11/111+28195566..28198695expressed protein
LOC_Os01g48620Os.41723.1.S1_at9/111+28202487..28205293expressed protein
LOC_Os01g48629NANA1+28208505..28209076NA
LOC_Os01g48640Os.33639.1.S1_at11/111+28209868..28212916expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23846.1.A1_at--48--9611Chr01:34420693..34420717 (25 bp)
TCATACAATTTCTACCACGTGTCGC
NONE
OsAffx.23846.1.A1_at--575--331Chr01:34420695..34420719 (25 bp)
ATACAATTTCTACCACGTGTCGCGT
NONE
OsAffx.23846.1.A1_at--950--77521Chr09:20310525..20310548 (24 bp)
GGTGATTCCTACTAGATATAGCTGG
NONE
OsAffx.23846.1.A1_at--957--65717Chr08:21856991..21857015 (25 bp)
GATTCCTACTAGATATAGCTGGGCA
NONE
OsAffx.23846.1.A1_at--680--106718Chr09:20310530..20310943 (25 bp)
TTCCTACTAGATATAGCTGGGCATT
NONE
OsAffx.23846.1.A1_at--354--9898Chr08:21856997..21857403 (25 bp)
TACTAGATATAGCTGGGCATTCCGT
NONE
OsAffx.23846.1.A1_at--740--3694Chr08:21856999..21857405 (25 bp)
CTAGATATAGCTGGGCATTCCGTTG
NONE
OsAffx.23846.1.A1_at--910--972Chr01:34420862..34420886 (25 bp)
AGGAGCACCCCGACATGCGCGATTG
NONE
OsAffx.23846.1.A1_at--469--5931Chr01:34420864..34420888 (25 bp)
GAGCACCCCGACATGCGCGATTGGT
NONE
OsAffx.23846.1.A1_at--420--5671Chr01:34420873..34420897 (25 bp)
GACATGCGCGATTGGTCCCCTGCAG
NONE
OsAffx.23846.1.A1_at--183--611Chr01:34420876..34420900 (25 bp)
ATGCGCGATTGGTCCCCTGCAGCTG
NONE
Target Sequence 
TCATACAATTTCTACCACGTGTCGCGTGATACTCGCGAGGTATCATGTGATACTTGTCAGATATCAGACGATTTCTACCA
TGTATCGCGTGATACTTGCGAGGTATTGGATGATACCTACCAGGTATCAGGTGATTCCTACTAGATATAGCTGGGCATTC
CGTTGGGGGAGGAGCACCCCGACATGCGCGATTGGTCCCCTGCAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23846.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis