Browse Element(s) Details


OsAffx.11519.1.S1_at

Description tigr:9629.m04673
TID=OsAffx.11519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4853011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48520NANA1+28146666..28148938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g48530OsAffx.11519.1.S1_at11/111+28160739..28162530expressed protein
LOC_Os01g48530Os.41729.1.S1_s_at11/111+28160739..28162530expressed protein
LOC_Os01g48540Os.31637.1.S1_at11/111+28167053..28169239Glyoxal oxidase N-terminus family protein, expressed
LOC_Os01g48550Os.30611.1.S1_at11/111+28170241..28171723expressed protein
LOC_Os01g48560OsAffx.11520.1.S1_at11/111+28175351..28175718hypothetical protein
LOC_Os01g48570NANA1+28179313..28182845expressed protein
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11519.1.S1_at--751--5911Chr01:28162029..28162053 (25 bp)
GAGACGTACGATACGGTGAATTCCA
LOC_Os01g48530
OsAffx.11519.1.S1_at--517--7351Chr01:28162044..28162068 (25 bp)
GTGAATTCCAAACTCCCATCATGAG
LOC_Os01g48530
OsAffx.11519.1.S1_at--516--3551Chr01:28161756..28162225 (25 bp)
CATCATGAGATCACCAAGCAGCAGT
LOC_Os01g48530
OsAffx.11519.1.S1_at--490--5051Chr01:28162218..28162242 (25 bp)
GCAGCAGTACTATCTATGGTGCCCC
LOC_Os01g48530
OsAffx.11519.1.S1_at--807--791Chr01:28162233..28162257 (25 bp)
ATGGTGCCCCACATTACACACATAA
LOC_Os01g48530
OsAffx.11519.1.S1_at--708--9851Chr01:28162247..28162271 (25 bp)
TACACACATAATCCTAGCATCACAT
LOC_Os01g48530
OsAffx.11519.1.S1_at--843--9691Chr01:28162266..28162290 (25 bp)
TCACATTGCCACTCTTTGAACCAGA
LOC_Os01g48530
OsAffx.11519.1.S1_at--1089--5411Chr01:28162283..28162441 (25 bp)
GAACCAGAGGAGTCTGCTCGCTTGA
LOC_Os01g48530
OsAffx.11519.1.S1_at--1144--1711Chr01:28162448..28162472 (25 bp)
ACCATGACCGAAGCCGATCGGCAGA
LOC_Os01g48530
OsAffx.11519.1.S1_at--11--4511Chr01:28162460..28162484 (25 bp)
GCCGATCGGCAGATTCGACAAGTAT
LOC_Os01g48530
OsAffx.11519.1.S1_at--561--5611Chr01:28162476..28162500 (25 bp)
GACAAGTATGAACTCTGACGATCCG
LOC_Os01g48530
Target Sequence 
GAGACGTACGATACGGTGAATTCCAAACTCCCATCATGAGATCACCAAGCAGCAGTACTATCTATGGTGCCCCACATTAC
ACACATAATCCTAGCATCACATTGCCACTCTTTGAACCAGAGGAGTCTGCTCGCTTGAGGGGACACCATGACCGAAGCCG
ATCGGCAGATTCGACAAGTATGAACTCTGACGATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis