Browse Element(s) Details


Os.41729.1.S1_s_at

Description gb:NM_192015.1
DB_XREF= gi:34911113
GEN=OJ1117_G01.26
TID=Os.41729.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1117_G01.26 (OJ1117_G01.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1117_G01.26 (OJ1117_G01.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4853011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48520NANA1+28146666..28148938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g48530OsAffx.11519.1.S1_at11/111+28160739..28162530expressed protein
LOC_Os01g48530Os.41729.1.S1_s_at11/111+28160739..28162530expressed protein
LOC_Os01g48540Os.31637.1.S1_at11/111+28167053..28169239Glyoxal oxidase N-terminus family protein, expressed
LOC_Os01g48550Os.30611.1.S1_at11/111+28170241..28171723expressed protein
LOC_Os01g48560OsAffx.11520.1.S1_at11/111+28175351..28175718hypothetical protein
LOC_Os01g48570NANA1+28179313..28182845expressed protein
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41729.1.S1_s_at--186--9311Chr01:28160786..28160810 (25 bp)
TCCCCTTCTAGCTTGTTCATCTTGT
LOC_Os01g48530
Os.41729.1.S1_s_at--376--10011Chr01:28160794..28160818 (25 bp)
TAGCTTGTTCATCTTGTCCTTCCAA
LOC_Os01g48530
Os.41729.1.S1_s_at--230--10671Chr01:28160822..28160846 (25 bp)
TTCCTCCTGGCAAGCTAGCTAGGTC
LOC_Os01g48530
Os.41729.1.S1_s_at--87--3251Chr01:28160832..28160856 (25 bp)
CAAGCTAGCTAGGTCTTCTTCTTCT
LOC_Os01g48530
Os.41729.1.S1_s_at--1138--10551Chr01:28160847..28160871 (25 bp)
TTCTTCTTCTTGGACATGAGTGGGA
LOC_Os01g48530
Os.41729.1.S1_s_at--669--7471Chr01:28160866..28160890 (25 bp)
GTGGGAGCAACTTTGGAGACAGCAT
LOC_Os01g48530
Os.41729.1.S1_s_at--140--6431Chr01:28161020..28161044 (25 bp)
GATCAGGTTACAGAGCGAAATGGCC
LOC_Os01g48530
Os.41729.1.S1_s_at--66--5571Chr01:28161036..28161060 (25 bp)
GAAATGGCCGAGTACTTCAACCCTC
LOC_Os01g48530
Os.41729.1.S1_s_at--965--3371Chr01:28161066..28161090 (25 bp)
CAGCCGGGAAGCTTGATCCACAGAA
LOC_Os01g48530
Os.41729.1.S1_s_at--1015--5391Chr01:28161073..28161097 (25 bp)
GAAGCTTGATCCACAGAACCGGCAG
LOC_Os01g48530
Os.41729.1.S1_s_at--1157--3291Chr01:28161084..28161107 (24 bp)
CACAGAACCGGCAGCCTTAACTTGA
LOC_Os01g48530
Target Sequence 
TCCCCTTCTAGCTTGTTCATCTTGTCCTTCCAAGTNTTCCTCCTGGCAAGCTAGCTAGGTCTTCTTCTTCTTGGACATGA
GTGGGAGCAACTTTGGAGACAGCATGGGATGGGGCAACAGCGGGAGGTCGTCGCCGGCCGGCTCCTCCAGGAAGGGCAAG
ANAGGCGGCGGCAGTGGCGGCGCGGATAAGCCGAAGCAGCCGCAACGAGGGCTCGGGGTGGCGCANNTGNGAGAAGATCA
GGTTACAGAGCGAAATGGCCGAGTACTTCAACCCTCTTNGNCAGCCGGGAAGCTTGATCCACAGAACCGGCAGCCTTAAC
TTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41729.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis