Browse Element(s) Details


OsAffx.11520.1.S1_at

Description tigr:9629.m04676
TID=OsAffx.11520.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4856011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48530OsAffx.11519.1.S1_at11/111+28160739..28162530expressed protein
LOC_Os01g48530Os.41729.1.S1_s_at11/111+28160739..28162530expressed protein
LOC_Os01g48540Os.31637.1.S1_at11/111+28167053..28169239Glyoxal oxidase N-terminus family protein, expressed
LOC_Os01g48550Os.30611.1.S1_at11/111+28170241..28171723expressed protein
LOC_Os01g48560OsAffx.11520.1.S1_at11/111+28175351..28175718hypothetical protein
LOC_Os01g48570NANA1+28179313..28182845expressed protein
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48590NANA1+28192397..28192723hypothetical protein
LOC_Os01g48600OsAffx.32032.4.S1_s_at11/111+28193682..28194201CDS, putative
LOC_Os01g48610Os.26755.1.S1_at11/111+28195566..28198695expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11520.1.S1_at--37--4911Chr01:28175664..28175688 (25 bp)
GCTTCAGCTCTCTCGGTGATGGGTT
LOC_Os01g48560
OsAffx.11520.1.S1_at--924--9431Chr01:28175652..28175676 (25 bp)
TCGGTGATGGGTTTGGTCTCTGAAA
LOC_Os01g48560
OsAffx.11520.1.S1_at--974--8951Chr01:28175632..28175656 (25 bp)
TGAAAACTTCCTTGACCCGTCGACT
LOC_Os01g48560
OsAffx.11520.1.S1_at--951--10831Chr01:28175608..28175632 (25 bp)
TTGTGTACCTCCACGAGCGTCGGAC
LOC_Os01g48560
OsAffx.11520.1.S1_at--556--7191Chr01:28175590..28175614 (25 bp)
GTCGGACGACTCATCGTTCGAATCA
LOC_Os01g48560
OsAffx.11520.1.S1_at--506--1391Chr01:28175563..28175587 (25 bp)
AGACGCCTCCTTTGATCCAGAAGAC
LOC_Os01g48560
OsAffx.11520.1.S1_at--939--8851Chr01:28175551..28175575 (25 bp)
TGATCCAGAAGACCCGACTTGCGTG
LOC_Os01g48560
OsAffx.11520.1.S1_at--758--8851Chr01:28175509..28175530 (22 bp)
TGATCGAATCTCTGTATTGCCGCTA
LOC_Os01g48560
OsAffx.11520.1.S1_at--639--6871Chr01:28175458..28175517 (25 bp)
GTATTGCCGCTAGGGCGACGCTGTC
LOC_Os01g48560
OsAffx.11520.1.S1_at--808--1831Chr01:28175441..28175465 (25 bp)
ACGCTGTCCTGCAGGCGGCGTTGAA
LOC_Os01g48560
OsAffx.11520.1.S1_at--634--3931Chr01:28175426..28175450 (25 bp)
CGGCGTTGAAGGTCCGACGAGCTCA
LOC_Os01g48560
Target Sequence 
GCTTCAGCTCTCTCGGTGATGGGTTTGGTCTCTGAAAACTTCCTTGACCCGTCGACTTGTGTACCTCCACGAGCGTCGGA
CGACTCATCGTTCGAATCACCAGACGCCTCCTTTGATCCAGAAGACCCGACTTGCGTGCTGTCAAGCTCCACCTCCGCTG
ATCGAATCTCTGTATTGCCGCTAGGGCGACGCTGTCCTGCAGGCGGCGTTGAAGGTCCGACGAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis