Browse Element(s) Details


Os.26755.1.S1_at

Description gb:AK068284.1
DB_XREF= gi:32978302
TID=Os.26755.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.12 (B1144G04.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146I22, full insert sequence.
FL= gb:AK068284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4861011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48550Os.30611.1.S1_at11/111+28170241..28171723expressed protein
LOC_Os01g48560OsAffx.11520.1.S1_at11/111+28175351..28175718hypothetical protein
LOC_Os01g48570NANA1+28179313..28182845expressed protein
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48590NANA1+28192397..28192723hypothetical protein
LOC_Os01g48600OsAffx.32032.4.S1_s_at11/111+28193682..28194201CDS, putative
LOC_Os01g48610Os.26755.1.S1_at11/111+28195566..28198695expressed protein
LOC_Os01g48620Os.41723.1.S1_at9/111+28202487..28205293expressed protein
LOC_Os01g48629NANA1+28208505..28209076NA
LOC_Os01g48640Os.33639.1.S1_at11/111+28209868..28212916expressed protein
LOC_Os01g48650Os.41248.2.A1_at6/111+28214900..28221119expressed protein
LOC_Os01g48650Os.41248.5.S1_x_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_x_at3/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.30013.1.S1_x_at1/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.23366.1.S1_at1/111+28214900..28221119expressed protein
LOC_Os01g48660Os.32087.1.S2_at11/111+28223202..28226040expressed protein
LOC_Os01g48660Os.32087.1.S1_at11/111+28223202..28226040expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26755.1.S1_at--896--1891Chr01:28198152..28198176 (25 bp)
ACGTGCAGAGGTGGATCCCGTCCTA
LOC_Os01g48610
Os.26755.1.S1_at--903--4811Chr01:28198267..28198291 (25 bp)
GCTCTTCTTTCAGCAGCGGCTCGGA
LOC_Os01g48610
Os.26755.1.S1_at--284--3791Chr01:28198286..28198310 (25 bp)
CTCGGAGGTGATTTCCTGTGTTGTG
LOC_Os01g48610
Os.26755.1.S1_at--1087--6491Chr01:28198342..28198366 (25 bp)
GATAGTCTCGACGTCAACACTTTAA
LOC_Os01g48610
Os.26755.1.S1_at--330--2031Chr01:28198360..28198384 (25 bp)
ACTTTAACTGTTGACCGGCAATCCG
LOC_Os01g48610
Os.26755.1.S1_at--302--8231Chr01:28198376..28198400 (25 bp)
GGCAATCCGTGGCATTCGTAGACAT
LOC_Os01g48610
Os.26755.1.S1_at--974--91Chr01:28198389..28198413 (25 bp)
ATTCGTAGACATTAGTGCGGTTTGA
LOC_Os01g48610
Os.26755.1.S1_at--24--4491Chr01:28198449..28198473 (25 bp)
GCCGGACGTCCTATATTTACACGGA
LOC_Os01g48610
Os.26755.1.S1_at--1145--10191Chr01:28198462..28198486 (25 bp)
TATTTACACGGAATTGCAACTCATG
LOC_Os01g48610
Os.26755.1.S1_at--177--3331Chr01:28198572..28198596 (25 bp)
CACTATTGAATGATTTTCGGCGGTT
LOC_Os01g48610
Os.26755.1.S1_at--379--2291Chr01:28198616..28198640 (25 bp)
AAATGATTATTTCCGCGCGCTGAAG
LOC_Os01g48610
Target Sequence 
ACGTGCAGAGGTGGATCCCGTCCTACATCGACGTCTACGCGGGGCCTCGTGACGGGCTCTTCAGCGTCGCGTGGGACGTC
GTGATACCGTGCGGGGCGGCGGCGCTGGCCGTGCTGCTCTTCTTTCAGCAGCGGCTCGGAGGTGATTTCCTGTGTTGTGT
GAAGAGAAGGAAGCCGGGGGGATCATACGAGATAGTCTCGACGTCAACACTTTAACTGTTGACCGGCAATCCGTGGCATT
CGTAGACATTAGTGCGGTTTGAATAAACAATACAGGGGGCGCAATTAGGGCCCGGGCGCCGGACGTCCTATATTTACACG
GAATTGCAACTCATGTTTAAAAATGCGTCAAATTTAGTGTGNGNNATTAAAAAAATAATCTTTGCTAGAATGATATCGAA
NAAANGTGGTTTTGCTAGTACACTATTGAATGATTTTCGGCGGTTTTGGGAGGAAATTTTCACGAAATGATTATTTCCGC
GCGCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis