Browse Element(s) Details


Os.32087.1.S1_at

Description gb:AK106072.1
DB_XREF= gi:32991281
TID=Os.32087.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.17 (B1144G04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H08, full insert sequence.
FL= gb:AK106072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48610Os.26755.1.S1_at11/111+28195566..28198695expressed protein
LOC_Os01g48620Os.41723.1.S1_at9/111+28202487..28205293expressed protein
LOC_Os01g48629NANA1+28208505..28209076NA
LOC_Os01g48640Os.33639.1.S1_at11/111+28209868..28212916expressed protein
LOC_Os01g48650Os.41248.2.A1_at6/111+28214900..28221119expressed protein
LOC_Os01g48650Os.41248.5.S1_x_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_x_at3/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.30013.1.S1_x_at1/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.23366.1.S1_at1/111+28214900..28221119expressed protein
LOC_Os01g48660Os.32087.1.S2_at11/111+28223202..28226040expressed protein
LOC_Os01g48660Os.32087.1.S1_at11/111+28223202..28226040expressed protein
LOC_Os01g48670OsAffx.19542.3.S1_x_at3/111+28227314..28231536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g48680Os.27644.1.S1_at11/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48680Os.27644.1.S1_s_at9/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48690Os.4701.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48690Os.53241.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32087.1.S1_at--119--8171Chr01:28224428..28224452 (25 bp)
GGAACGCGACCCAGCTGAACAGCAG
LOC_Os01g48660
Os.32087.1.S1_at--507--2211Chr01:28224455..28224479 (25 bp)
ACAACCACGCAAGTGTAGGCTCCGA
LOC_Os01g48660
Os.32087.1.S1_at--930--8811Chr01:28224488..28224512 (25 bp)
TGATAACCGCGTCGAGCTTCGAGGA
LOC_Os01g48660
Os.32087.1.S1_at--267--8171Chr01:28224514..28224538 (25 bp)
TGGAAGGGTAACCTCTCCGACGTGA
LOC_Os01g48660
Os.32087.1.S1_at--862--2531Chr01:28224544..28224568 (25 bp)
AACTACAGCTTCACCATGCTTGAGG
LOC_Os01g48660
Os.32087.1.S1_at--796--1431Chr01:28224575..28224599 (25 bp)
AGAAGCATTACCTCAAGACCGGGCC
LOC_Os01g48660
Os.32087.1.S1_at--1108--1371Chr01:28224590..28224614 (25 bp)
AGACCGGGCCGAGCGATAGCAAGAA
LOC_Os01g48660
Os.32087.1.S1_at--1031--5511Chr01:28224689..28224713 (25 bp)
GAGAAACAGGGTCTGGAACCGCCTA
LOC_Os01g48660
Os.32087.1.S1_at--415--3931Chr01:28224788..28224812 (25 bp)
CGGCGCAACTTGAGCAGGGTACACT
LOC_Os01g48660
Os.32087.1.S1_at--1071--5751Chr01:28224834..28224858 (25 bp)
GACGTACTACGTTGCACCTAAGAAT
LOC_Os01g48660
Os.32087.1.S1_at--261--2731Chr01:28224853..28224877 (25 bp)
AAGAATTGGTCTTCCTTTGGCCAGC
LOC_Os01g48660
Target Sequence 
GGAACGCGACCCAGCTGAACAGCAGCGACAACCACGCAAGTGTAGGCTCCGACGTCGCTCTGATAACCGCGTCGAGCTTC
GAGGAGTGGAAGGGTAACCTCTCCGACGTGAACTACAACTACAGCTTCACCATGCTTGAGGAGGCCAAGAAGCATTACCT
CAAGACCGGGCCGAGCGATAGCAAGAAGAATAGCAAGGGTTCGTTCCCGGGGAACTACTCTCACTCATACCGTGACTTCC
GTTTCCCGTTCTTCTTGGAGGGAGAAACAGGGTCTGGAACCGCCTACCCGGTCGCGATCGGCTCGGCGATGGTCGACGGT
GACAGGCTGGCTGCCGAACATTCGTTCTCACGGCACGCGGCGGCGCAACTTGAGCAGGGTACACTGGTGAATGTCAGCTA
TGGTGTGACGTACTACGTTGCACCTAAGAATTGGTCTTCCTTTGGCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis