Browse Element(s) Details


Os.27644.1.S1_at

Description gb:AB100696.1
DB_XREF= gi:33235552
GEN=OsTPC1
TID=Os.27644.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27644 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsTPC1 mRNA for calcium channel, complete cds.
PROD=calcium channel
FL= gb:AB071014.1 gb:AK067839.1 gb:AK100998.1 gb:AB100696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4868011/11voltage-dependent calcium channel protein TPC1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48629NANA1+28208505..28209076NA
LOC_Os01g48640Os.33639.1.S1_at11/111+28209868..28212916expressed protein
LOC_Os01g48650Os.41248.2.A1_at6/111+28214900..28221119expressed protein
LOC_Os01g48650Os.41248.5.S1_x_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_x_at3/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.30013.1.S1_x_at1/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.23366.1.S1_at1/111+28214900..28221119expressed protein
LOC_Os01g48660Os.32087.1.S2_at11/111+28223202..28226040expressed protein
LOC_Os01g48660Os.32087.1.S1_at11/111+28223202..28226040expressed protein
LOC_Os01g48670OsAffx.19542.3.S1_x_at3/111+28227314..28231536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g48680Os.27644.1.S1_at11/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48680Os.27644.1.S1_s_at9/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48690Os.4701.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48690Os.53241.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48700Os.16381.1.S1_a_at11/111+28251750..28255281Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os01g48710Os.36709.1.S1_x_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48710Os.36709.1.S1_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006816biological_processcalcium ion transport
GO:0009845biological_processseed germination
GO:0010119biological_processregulation of stomatal movement
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0005245molecular_functionvoltage-gated calcium channel activity
GO:0005262molecular_functioncalcium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27644.1.S1_at--753--9751Chr01:28233534..28233558 (25 bp)
TAATACTCCACATTTCCTTATTGTT
LOC_Os01g48680
Os.27644.1.S1_at--839--3091Chr01:28233533..28233557 (25 bp)
AATACTCCACATTTCCTTATTGTTA
LOC_Os01g48680
Os.27644.1.S1_at--840--311Chr01:28233532..28233556 (25 bp)
ATACTCCACATTTCCTTATTGTTAT
LOC_Os01g48680
Os.27644.1.S1_at--1096--9891Chr01:28233531..28233555 (25 bp)
TACTCCACATTTCCTTATTGTTATA
LOC_Os01g48680
Os.27644.1.S1_at--519--1991Chr01:28233530..28233554 (25 bp)
ACTCCACATTTCCTTATTGTTATAC
LOC_Os01g48680
Os.27644.1.S1_at--418--3811Chr01:28233529..28233553 (25 bp)
CTCCACATTTCCTTATTGTTATACT
LOC_Os01g48680
Os.27644.1.S1_at--821--9211Chr01:28233528..28233552 (25 bp)
TCCACATTTCCTTATTGTTATACTA
LOC_Os01g48680
Os.27644.1.S1_at--542--4371Chr01:28233527..28233551 (25 bp)
CCACATTTCCTTATTGTTATACTAT
LOC_Os01g48680
Os.27644.1.S1_at--1052--3311Chr01:28233526..28233550 (25 bp)
CACATTTCCTTATTGTTATACTATA
LOC_Os01g48680
Os.27644.1.S1_at--149--3591Chr01:28233524..28233548 (25 bp)
CATTTCCTTATTGTTATACTATATA
LOC_Os01g48680
Os.27644.1.S1_at--143--211Chr01:28233523..28233547 (25 bp)
ATTTCCTTATTGTTATACTATATAC
LOC_Os01g48680
Target Sequence 
TAATACTCCACATTTCCTTATTGTTATACTATATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis