Browse Element(s) Details


Os.36709.1.S1_at

Description gb:AK062840.1
DB_XREF= gi:32972858
TID=Os.36709.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.22 (B1144G04.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H04, full insert sequence.
FL= gb:AK062840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4871011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48680Os.27644.1.S1_at11/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48680Os.27644.1.S1_s_at9/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48690Os.4701.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48690Os.53241.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48700Os.16381.1.S1_a_at11/111+28251750..28255281Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os01g48710Os.36709.1.S1_x_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48710Os.36709.1.S1_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36709.1.S1_at--1051--351Chr01:28257715..28257739 (25 bp)
ATAATCCTAATAAAATCTCGCCGCG
LOC_Os01g48710
Os.36709.1.S1_at--524--9251Chr01:28257711..28257735 (25 bp)
TCCTAATAAAATCTCGCCGCGACGA
LOC_Os01g48710
Os.36709.1.S1_at--976--7771Chr01:28257571..28257595 (25 bp)
GGTGCCGATCACCTGCAAGAAGTGC
LOC_Os01g48710
Os.36709.1.S1_at--1157--3351Chr01:28257562..28257586 (25 bp)
CACCTGCAAGAAGTGCAAATCCTGC
LOC_Os01g48710
Os.36709.1.S1_at--468--2271Chr01:28257546..28257570 (25 bp)
AAATCCTGCATCCTGCAGATCGTCT
LOC_Os01g48710
Os.36709.1.S1_at--221--4991Chr01:28257539..28257563 (25 bp)
GCATCCTGCAGATCGTCTCAAGGAA
LOC_Os01g48710
Os.36709.1.S1_at--1146--5031Chr01:28257533..28257556 (24 bp)
GCAGATCGTCTCAAGGAACAAAGGG
LOC_Os01g48710
Os.36709.1.S1_at--924--4071Chr01:28257396..28257420 (25 bp)
CGAGAAGAGCACGCTGACGGTGATC
LOC_Os01g48710
Os.36709.1.S1_at--651--3991Chr01:28257360..28257384 (25 bp)
CGTGGTGGTGATCGTGGACAAGCTC
LOC_Os01g48710
Os.36709.1.S1_at--1037--5591Chr01:28257344..28257368 (25 bp)
GACAAGCTCCGGCACCCGAAGAAGG
LOC_Os01g48710
Os.36709.1.S1_at--1042--2731Chr01:28257182..28257206 (25 bp)
AAGAAGGAGTGCGCCGAGAAGCTCA
LOC_Os01g48710
Target Sequence 
ATAATCCTAATAAAATCTCGCCGCGACGATGAAGATAGTGCTCAAGGTGCCGATCACCTGCAAGAAGTGCAAATCCTGCA
TCCTGCAGATCGTCTCAAGGAACAAAGGGGTCAAGTCGCTGACGTTCGACGACGAGAAGAGCACGCTGACGGTGATCGGG
GAGGTGGACGTGGTGGTGATCGTGGACAAGCTCCGGCACCCGAAGAAGGGGAAGGAGAAGAGGGAGGGGTACATGGTGGA
GGTGATGGCGGTGAGCGACGAGAAGAAGGAGGCCGAGGAGAAGAAGAAGAAGGACGAGGAGGAGAAGAAGAAGAAGGAGA
AGGAGAAGGAGGAGGAAGAGAAGAAGAAGAAGGAGTGCGCCGAGAAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis