Browse Element(s) Details


Os.48002.1.A1_x_at

Description gb:CR288233
DB_XREF= gi:44674799
DB_XREF=CR288233
CLONE=y713f06p3
TID=Os.48002.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA polymerase III subunit (B1144G04.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4872011/11RNA polymerase III subunit RPC82 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48680Os.27644.1.S1_at11/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48680Os.27644.1.S1_s_at9/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48690Os.4701.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48690Os.53241.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48700Os.16381.1.S1_a_at11/111+28251750..28255281Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os01g48710Os.36709.1.S1_x_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48710Os.36709.1.S1_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48740NANA1+28283505..28284436aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_x_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.2.S1_x_at4/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48760Os.4649.1.S1_at11/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48760OsAffx.9292.1.S1_at10/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48770Os.6731.1.S1_at10/111+28292556..2829496560S ribosomal protein L37a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48002.1.A1_x_at--318--911Chr01:28271089..28271113 (25 bp)
AGGCTATTGGTCAGAGAACGCGGTC
LOC_Os01g48720
Os.48002.1.A1_x_at--580--5451Chr01:28271104..28271128 (25 bp)
GAACGCGGTCCAGTTGAGACAGATA
LOC_Os01g48720
Os.48002.1.A1_x_at--228--2691Chr01:28271385..28271409 (25 bp)
AAGCTTTGGAAGGACGACTACATCG
LOC_Os01g48720
Os.48002.1.A1_x_at--988--4031Chr01:28272771..28272795 (25 bp)
CGATAATCTATGTCATGCTGCTTTA
LOC_Os01g48720
Os.48002.1.A1_x_at--1112--9091Chr01:28272786..28272810 (25 bp)
TGCTGCTTTAAACCTGCGGCAAATG
LOC_Os01g48720
Os.48002.1.A1_x_at--211--10491Chr01:28272816..28272840 (25 bp)
TTACATAGCTGAACTCCTACTCGAG
LOC_Os01g48720
Os.48002.1.A1_x_at--806--3111Chr01:28273531..28273555 (25 bp)
AATATTTTGATCTTAGCCCTGACTA
LOC_Os01g48720
Os.48002.1.A1_x_at--1149--9971Chr01:28273544..28273568 (25 bp)
TAGCCCTGACTAGACATGACGATTC
LOC_Os01g48720
Os.48002.1.A1_x_at--25--8951Chr01:28273560..28273584 (25 bp)
TGACGATTCTCTCATGCTGTTTCAG
LOC_Os01g48720
Os.48002.1.A1_x_at--543--8751Chr01:28273599..28273623 (25 bp)
TGTAGCAGGTGTTCCAGCATCTTTC
LOC_Os01g48720
Os.48002.1.A1_x_at--261--3411Chr01:28273613..28273637 (25 bp)
CAGCATCTTTCTTCCATACTTAATC
LOC_Os01g48720
Target Sequence 
AGGCTATTGGTCAGAGAACGCGGTCCAGTTGAGACAGATAAAATTATTGACACAACAATTCTTGACAAGCAGATTGTTCA
TGGAACTTTGTATAAGCTTTGGAAGGACGACTACATCGATACAGAGAGAATCCTTTCTGGAACAGGAACAGGGAACACAC
AATATTTTGTATGGAGAGTGAAAAATACATTCCGGGAACAGTTCATCGATAATCTATGTCATGCTGCTTTAAACCTGCGG
CAAATGGTCAATTACATAGCTGAACTCCTACTCGAGGNCNCANANNNNGACACAAAGTTGCGGAATAGAAAAAATATTTT
GATCTTAGCCCTGACTAGACATGACGATTCTCTCATGCTGTTTCAGGATTTTTGAAACGCTGTAGCAGGTGTTCCAGCAT
CTTTCTTCCATACTTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48002.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis