Browse Element(s) Details


OsAffx.23718.1.S1_at

Description gb:NM_192039.1
DB_XREF= gi:34911161
GEN=B1144G04.28
TID=OsAffx.23718.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative chloroplast nucleoid DNA (B1144G04.28), mRNA.
PROD=putative chloroplast nucleoid DNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4875011/11aspartyl protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48740NANA1+28283505..28284436aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_x_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.2.S1_x_at4/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48760Os.4649.1.S1_at11/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48760OsAffx.9292.1.S1_at10/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48770Os.6731.1.S1_at10/111+28292556..2829496560S ribosomal protein L37a, putative, expressed
LOC_Os01g48780OsAffx.25095.1.S1_at10/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.3.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.5.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23718.1.S1_at--639--6131Chr01:28287576..28287600 (25 bp)
GAGGGCACCGCCTCGTGCAAGCCTG
LOC_Os01g48750
OsAffx.23718.1.S1_at--754--3631Chr01:28287680..28287704 (25 bp)
CTTCTACGCGGTCACCGTCAAGGGC
LOC_Os01g48750
OsAffx.23718.1.S1_at--458--4151Chr01:28287738..28287762 (25 bp)
CGCGCCGTCTGGGACGTCGAGCAGG
LOC_Os01g48750
OsAffx.23718.1.S1_at--832--5091Chr01:28287787..28287811 (25 bp)
GCACGAGCCTGACGATGCTGGCCAA
LOC_Os01g48750
OsAffx.23718.1.S1_at--619--5871Chr01:28287791..28287815 (25 bp)
GAGCCTGACGATGCTGGCCAAGCCG
LOC_Os01g48750
OsAffx.23718.1.S1_at--391--7591Chr01:28287858..28287882 (25 bp)
GGGCTACCCAGGGTGACCATGGACC
LOC_Os01g48750
OsAffx.23718.1.S1_at--1053--9931Chr01:28287862..28287886 (25 bp)
TACCCAGGGTGACCATGGACCCGTT
LOC_Os01g48750
OsAffx.23718.1.S1_at--924--4031Chr01:28287937..28287961 (25 bp)
CGTTGCCAATGCTGGCCGTGCACTT
LOC_Os01g48750
OsAffx.23718.1.S1_at--229--3031Chr01:28287944..28287968 (25 bp)
AATGCTGGCCGTGCACTTCGCCGGG
LOC_Os01g48750
OsAffx.23718.1.S1_at--223--1511Chr01:28288093..28288117 (25 bp)
AGCACCTCTGGGAGTACGATCTGAA
LOC_Os01g48750
OsAffx.23718.1.S1_at--723--6971Chr01:28288106..28288130 (25 bp)
GTACGATCTGAAGAACCGACGGCTC
LOC_Os01g48750
Target Sequence 
GAGGGCACCGCCTCGTGCAAGCCTGCGCCTGCGCCCACGCCCGCCCCCGCAGGCGCGCCCGGCGCGCGCCAGACGCCGCT
GGTGCTCGACCACCGGACGCGCCCCTTCTACGCGGTCACCGTCAAGGGCGTCTCCGTCGCCGGGGAGCTGCTCAAGATCC
CGCGCGCCGTCTGGGACGTCGAGCAGGGCGGCGGCGCCATCCTCGACTCCGGCACGAGCCTGACGATGCTGGCCAAGCCG
GCGTACCGCGCCGTGGTGGCGGCGCTGAGCAAGAGGCTCGCGGGGCTACCCAGGGTGACCATGGACCCGTTCGACTACTG
CTACAACTGGACGTCGCCGTCGGGCAGCGACGTCGCCGCGCCGTTGCCAATGCTGGCCGTGCACTTCGCCGGGTCGGCGC
GCCTGGAGCCGCCGGCGAAGAGCTACGTGATCGACGCGGCGCCCGGGGTGAAGTGCATCGGCTTGCAGGAGGGCCCGTGG
CCGGGCCTGTCCGTCATCGGCAACATCCTGCAGCAGGAGCACCTCTGGGAGTACGATCTGAAGAACCGACGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis