Browse Element(s) Details


Os.4649.1.S1_at

Description gb:AK062530.1
DB_XREF= gi:32972548
TID=Os.4649.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-E02, full insert sequence.
FL= gb:AK062709.1 gb:AK062530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4876011/11THAP domain protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48740NANA1+28283505..28284436aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_x_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.2.S1_x_at4/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48760Os.4649.1.S1_at11/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48760OsAffx.9292.1.S1_at10/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48770Os.6731.1.S1_at10/111+28292556..2829496560S ribosomal protein L37a, putative, expressed
LOC_Os01g48780OsAffx.25095.1.S1_at10/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.3.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.5.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4649.1.S1_at--5--1471Chr01:28291510..28291534 (25 bp)
AGAAGGGTTCGTTTGATGCTGAAAA
LOC_Os01g48760
Os.4649.1.S1_at--848--7351Chr01:28291542..28291566 (25 bp)
GTGACGCTCCAAAGCGAACTTGTGG
LOC_Os01g48760
Os.4649.1.S1_at--1112--7631Chr01:28291941..28291965 (25 bp)
GGGAGCTCTCATATGTTGTTCAGAT
LOC_Os01g48760
Os.4649.1.S1_at--863--8231Chr01:28291966..28291990 (25 bp)
GGCAACAATCACAACCAGTCTACAG
LOC_Os01g48760
Os.4649.1.S1_at--510--2811Chr01:28292015..28292039 (25 bp)
AAGATTTGAACGATACTGCGCCCCT
LOC_Os01g48760
Os.4649.1.S1_at--1054--7171Chr01:28292061..28292085 (25 bp)
GTCTGTGGCACTTCTGGATTTTTAT
LOC_Os01g48760
Os.4649.1.S1_at--1046--6871Chr01:28292101..28292125 (25 bp)
GTATTTTTGCCTATTATATCTGGGA
LOC_Os01g48760
Os.4649.1.S1_at--753--1751Chr01:28292135..28292159 (25 bp)
ACCTGCCCCTACTAGTTTGACATAA
LOC_Os01g48760
Os.4649.1.S1_at--812--3091Chr01:28292158..28292182 (25 bp)
AATAGACGCTGAAAATACGCCCTTC
LOC_Os01g48760
Os.4649.1.S1_at--345--2991Chr01:28292194..28292218 (25 bp)
AATGTCCATGCGAGTTCGGGCTTGT
LOC_Os01g48760
Os.4649.1.S1_at--659--1231Chr01:28292206..28292230 (25 bp)
AGTTCGGGCTTGTTCATGCGCATGA
LOC_Os01g48760
Target Sequence 
AGAAGGGTTCGTTTGATGCTGAAAAGAAAACAGTGACGCTCCAAAGCGAACTTGTGGGGAACGCATCCAAGGTGAAACAG
ATCACAAGAGNTTTTCAATTGGTAGATGGGGAGCTCTCATATGTTGTTCAGATGGCAACAATCACAACCAGTCTACAGCC
ACATCTCAAAGCCCTTCTGAAGAAGATTTGAACGATACTGCGCCCCTCTAGGGGCGCAGTGCGGCGGCGTCTGTGGCACT
TCTGGATTTTTATGTTAAAANTAATAATGGTATTTTTGCCTATTATATCTGGGAATTGGGGCAACCTGCCCCTACTAGTT
TGACATAATAGACGCTGAAAATACGCCCTTCAGAGTTCAGANAATGTCCATGCGAGTTCGGGCTTGTTCATGCGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis