Browse Element(s) Details


OsAffx.25095.1.S1_at

Description tigr:9629.m04700
TID=OsAffx.25095.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4878010/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48740NANA1+28283505..28284436aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_x_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.2.S1_x_at4/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48760Os.4649.1.S1_at11/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48760OsAffx.9292.1.S1_at10/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48770Os.6731.1.S1_at10/111+28292556..2829496560S ribosomal protein L37a, putative, expressed
LOC_Os01g48780OsAffx.25095.1.S1_at10/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.3.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.5.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed
LOC_Os01g48800Os.29907.1.S1_at11/111+28322809..28324394expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25095.1.S1_at--210--8231NONE
GGCAATGTCGGAGAGAGAAGACAAT
NONE
OsAffx.25095.1.S1_at--1143--5351Chr01:28306161..28306185 (25 bp)
GAAGACAATTTGTGTGGTCCGGAAA
LOC_Os01g48780
OsAffx.25095.1.S1_at--761--3111Chr01:28306167..28306191 (25 bp)
AATTTGTGTGGTCCGGAAAGTTGCA
LOC_Os01g48780
OsAffx.25095.1.S1_at--64--5571Chr01:28306197..28306221 (25 bp)
GAAAGAGGGAGAACTACAGGCCGCT
LOC_Os01g48780
OsAffx.25095.1.S1_at--221--1611Chr01:28306226..28306250 (25 bp)
AGCTGGAGGTCGTCACCACGGGTCC
LOC_Os01g48780
OsAffx.25095.1.S1_at--31--3831Chr01:28306228..28306252 (25 bp)
CTGGAGGTCGTCACCACGGGTCCAC
LOC_Os01g48780
OsAffx.25095.1.S1_at--655--411Chr01:28306258..28306282 (25 bp)
ATCATGGCCCGCATCGCCAGGGAGG
LOC_Os01g48780
OsAffx.25095.1.S1_at--958--6131Chr01:28306288..28306312 (25 bp)
GAGGGAGCCCAGTGGCGGTGGCCTA
LOC_Os01g48780
OsAffx.25095.1.S1_at--648--6211Chr01:28306317..28306341 (25 bp)
GAGGCTGGCTCGATCCGCGCTGACA
LOC_Os01g48780
OsAffx.25095.1.S1_at--637--551Chr01:28306329..28306353 (25 bp)
ATCCGCGCTGACAGCGGCGGTTCCG
LOC_Os01g48780
OsAffx.25095.1.S1_at--1054--4631Chr01:28306345..28306369 (25 bp)
GCGGTTCCGGACAGATCGACGCCAC
LOC_Os01g48780
Target Sequence 
GGCAATGTCGGAGAGAGAAGACAATTTGTGTGGTCCGGAAAGTTGCAGAGGAGAAAGAGGGAGAACTACAGGCCGCTGAC
GAGCTGGAGGTCGTCACCACGGGTCCACGCCTCATCATGGCCCGCATCGCCAGGGAGGGAGGAGAGGGAGCCCAGTGGCG
GTGGCCTAGGAGGAGGCTGGCTCGATCCGCGCTGACAGCGGCGGTTCCGGACAGATCGACGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis