Browse Element(s) Details


Os.6731.1.S1_at

Description gb:AK119702.1
DB_XREF= gi:37989325
TID=Os.6731.1
CNT=56
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 60S ribosomal protein L37a (B1144G04.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-D09, full insert sequence.
FL= gb:AK119702.1 gb:AK119801.1 gb:AK059643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4877010/1160S ribosomal protein L37a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48740NANA1+28283505..28284436aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_x_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.2.S1_x_at4/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48760Os.4649.1.S1_at11/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48760OsAffx.9292.1.S1_at10/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48770Os.6731.1.S1_at10/111+28292556..2829496560S ribosomal protein L37a, putative, expressed
LOC_Os01g48780OsAffx.25095.1.S1_at10/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.3.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48780OsAffx.25095.5.S1_x_at1/111+28304980..28306407transposon protein, putative, unclassified
LOC_Os01g48790Os.9641.1.S1_x_at11/111+28310536..28317230YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6731.1.S1_at--877--9191Chr01:28293820..28293839 (20 bp)
TCCAAGTACTTCTGTGAGTTTCTGT
LOC_Os01g48770
Os.6731.1.S1_at--944--1191NONE
AGTTTCTGTGGGAAGTTTGCCGTGA
NONE
Os.6731.1.S1_at--292--9011Chr01:28292935..28292959 (25 bp)
TGAAGGCCGGTGGTGCTTACACCAT
LOC_Os01g48770
Os.6731.1.S1_at--8--1991Chr01:28292816..28292840 (25 bp)
ACTGCTAGTGCGGTCACTGTCAGGA
LOC_Os01g48770
Os.6731.1.S1_at--465--8731Chr01:28292799..28292823 (25 bp)
TGTCAGGAGCACAATCCGTCGTCTG
LOC_Os01g48770
Os.6731.1.S1_at--1031--8971Chr01:28292763..28292787 (25 bp)
TGAAGCCTGATTGCACTACGTTTGT
LOC_Os01g48770
Os.6731.1.S1_at--813--9771Chr01:28292734..28292758 (25 bp)
TAAGGAGTCCTGTGATTCTGTATCG
LOC_Os01g48770
Os.6731.1.S1_at--345--6571Chr01:28292721..28292745 (25 bp)
GATTCTGTATCGAGTCAAGACCTAT
LOC_Os01g48770
Os.6731.1.S1_at--271--10091Chr01:28292647..28292671 (25 bp)
TAGGATCTCCTAAGCATGTTGCTAA
LOC_Os01g48770
Os.6731.1.S1_at--1076--9811Chr01:28292625..28292649 (25 bp)
TAAAACCTGTACTTTGAAGCCATTG
LOC_Os01g48770
Os.6731.1.S1_at--131--9651Chr01:28292589..28292613 (25 bp)
TCAGTTACCTGCGATCCAAATATTG
LOC_Os01g48770
Target Sequence 
TCCAAGTACTTCTGTGAGTTTCTGTGGGAAGTTTGCCGTGAAGAGGAAAGCAGTTGGAATCTGGGGATGCAAGGACTGTG
GGAAGGTGAAGGCCGGTGGTGCTTACACCATGAACACTGCTAGTGCGGTCACTGTCAGGAGCACAATCCGTCGTCTGAGG
GAGCAGACTGAAGCCTGATTGCACTACGTTTGTGCCGTAAGGAGTCCTGTGATTCTGTATCGAGTCAAGACCTATATTGG
CTGTTGAGCCAAAGCACATCGTTTAGCATTTTTGTTCTCTACTTTAGGATCTCCTAAGCATGTTGCTAAAACCTGTACTT
TGAAGCCATTGTGAACTTAAAATCAGTTACCTGCGATCCAAATATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis