Browse Element(s) Details


Os.49113.1.S1_s_at

Description gb:AK068292.1
DB_XREF= gi:32978310
TID=Os.49113.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149O08, full insert sequence.
FL= gb:AK058515.1 gb:AK068292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4872011/11RNA polymerase III subunit RPC82 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48680Os.27644.1.S1_at11/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48680Os.27644.1.S1_s_at9/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48690Os.4701.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48690Os.53241.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48700Os.16381.1.S1_a_at11/111+28251750..28255281Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os01g48710Os.36709.1.S1_x_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48710Os.36709.1.S1_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48740NANA1+28283505..28284436aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_x_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.1.S1_at11/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48750OsAffx.23718.2.S1_x_at4/111+28287210..28288387aspartyl protease family protein, putative, expressed
LOC_Os01g48760Os.4649.1.S1_at11/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48760OsAffx.9292.1.S1_at10/111+28288587..28292284THAP domain protein 4, putative, expressed
LOC_Os01g48770Os.6731.1.S1_at10/111+28292556..2829496560S ribosomal protein L37a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49113.1.S1_s_at--457--10531Chr01:28273580..28273604 (25 bp)
TTCAGGATTTTTGAAACGCTGTAGC
LOC_Os01g48720
Os.49113.1.S1_s_at--458--3471Chr01:28273582..28273606 (25 bp)
CAGGATTTTTGAAACGCTGTAGCAG
LOC_Os01g48720
Os.49113.1.S1_s_at--547--6811Chr01:28273672..28273696 (25 bp)
GTTTATTTTGCACCCAGGCTTTTAT
LOC_Os01g48720
Os.49113.1.S1_s_at--716--10191Chr01:28273675..28273699 (25 bp)
TATTTTGCACCCAGGCTTTTATTGG
LOC_Os01g48720
Os.49113.1.S1_s_at--489--10251Chr01:28273678..28273702 (25 bp)
TTTGCACCCAGGCTTTTATTGGGTC
LOC_Os01g48720
Os.49113.1.S1_s_at--215--9031Chr01:28273680..28273704 (25 bp)
TGCACCCAGGCTTTTATTGGGTCAA
LOC_Os01g48720
Os.49113.1.S1_s_at--179--9971Chr01:28273711..28273735 (25 bp)
TAGGATTAACCAACGCTTTCCCTAG
LOC_Os01g48720
Os.49113.1.S1_s_at--769--9791Chr01:28273717..28273741 (25 bp)
TAACCAACGCTTTCCCTAGGCCAAT
LOC_Os01g48720
Os.49113.1.S1_s_at--496--9111Chr01:28273772..28273796 (25 bp)
TCAAACCAAAGTTCGGAAATGAAAT
LOC_Os01g48720
Os.49113.1.S1_s_at--650--6691Chr01:28273782..28273806 (25 bp)
GTTCGGAAATGAAATCCTTTGGTAT
LOC_Os01g48720
Os.49113.1.S1_s_at--709--5571Chr01:28273792..28273816 (25 bp)
GAAATCCTTTGGTATATTGGACCCT
LOC_Os01g48720
Target Sequence 
TTCAGGATTTTTGAAACGCTGTAGCAGGTGTTCCAGCATCTTTCTTCCATACTTAATCATACTTCTTTTGAGCTAGATGG
TGGAATATCATAGTTTATTTTGCACCCAGGCTTTTATTGGGTCAACTGGCTTAGGATTAACCAACGCTTTCCCTAGGCCA
ATCGAACCAACCTTTCCTTTTGGCATTTCGTTTCAAACCAAAGTTCGGAAATGAAATCCTTTGGTATATTGGACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49113.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis