Browse Element(s) Details


Os.53241.1.S1_at

Description gb:AK071536.1
DB_XREF= gi:32981559
TID=Os.53241.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101N15, full insert sequence.
FL= gb:AK071536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4869011/11ribosomal protein S20 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48660Os.32087.1.S2_at11/111+28223202..28226040expressed protein
LOC_Os01g48660Os.32087.1.S1_at11/111+28223202..28226040expressed protein
LOC_Os01g48670OsAffx.19542.3.S1_x_at3/111+28227314..28231536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g48680Os.27644.1.S1_at11/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48680Os.27644.1.S1_s_at9/111+28233459..28247798voltage-dependent calcium channel protein TPC1, putative, expressed
LOC_Os01g48690Os.4701.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48690Os.53241.1.S1_at11/111+28249166..28251184ribosomal protein S20 containing protein, expressed
LOC_Os01g48700Os.16381.1.S1_a_at11/111+28251750..28255281Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os01g48710Os.36709.1.S1_x_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48710Os.36709.1.S1_at11/111+28256959..28257798heavy metal-associated domain containing protein, expressed
LOC_Os01g48720Os.49113.1.S1_s_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.48002.1.A1_x_at11/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed
LOC_Os01g48720Os.49113.1.S1_at9/111+28265649..28273872RNA polymerase III subunit RPC82 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53241.1.S1_at--1150--331Chr01:28249640..28249664 (25 bp)
ATAAAATGTGGTGCTGCCCTTTCTC
LOC_Os01g48690
Os.53241.1.S1_at--103--91Chr01:28249667..28249691 (25 bp)
ATTGCCTATGATCCAGAGCTTTCCA
LOC_Os01g48690
Os.53241.1.S1_at--642--3191Chr01:28249690..28249714 (25 bp)
CAATGGTTCCATCCCACTGTAAAAA
LOC_Os01g48690
Os.53241.1.S1_at--185--991Chr01:28249725..28249749 (25 bp)
AGGAGTACTTAGTTGCACATTGCAC
LOC_Os01g48690
Os.53241.1.S1_at--938--7071Chr01:28249783..28249807 (25 bp)
GTAATTAGCTGCGTCAGTGCGTCAA
LOC_Os01g48690
Os.53241.1.S1_at--800--1131Chr01:28249798..28249822 (25 bp)
AGTGCGTCAATCAGCTCATGAGCAG
LOC_Os01g48690
Os.53241.1.S1_at--515--5031Chr01:28249819..28249843 (25 bp)
GCAGAGTTTCTTGTTAGTACGCCTT
LOC_Os01g48690
Os.53241.1.S1_at--379--10431Chr01:28249863..28249887 (25 bp)
TTATGTAATGTCCACTGTCCACTGT
LOC_Os01g48690
Os.53241.1.S1_at--211--8711Chr01:28249878..28249902 (25 bp)
TGTCCACTGTCAAGCTCCAAAAATG
LOC_Os01g48690
Os.53241.1.S1_at--666--9772Chr01:28249957..28249981 (25 bp)
TAATGTACCCATGCTAACGCTACGG
LOC_Os01g48690
Os.53241.1.S1_at--29--2611Chr01:28249972..28249996 (25 bp)
AACGCTACGGCGATACTATGTGATA
LOC_Os01g48690
Target Sequence 
ATAAAATGTGGTGCTGCCCTTTCTCGCATTGCCTATGATCCAGAGCTTTCCAATGGTTCCATCCCACTGTAAAAAAAAAT
GATATAGGAGTACTTAGTTGCACATTGCACGATACACTGTGCAGAGAGAATGGGAAATTAGGCGTAATTAGCTGCGTCAG
TGCGTCAATCAGCTCATGAGCAGAGTTTCTTGTTAGTACGCCTTCTTGGAAATGTAGATGGATTTATGTAATGTCCACTG
TCCACTGTCAAGCTCCAAAAATGGAGTGAATGTGATTTTAAAAGGTGCTGCTTATTTGAATTATAGTATCAAACTAGTAA
TGTACCCATGCTAACGCTACGGCGATACTATGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis