Browse Element(s) Details


Os.41723.1.S1_at

Description gb:NM_192024.1
DB_XREF= gi:34911131
GEN=B1144G04.13
TID=Os.41723.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1144G04.13 (B1144G04.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1144G04.13 (B1144G04.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g486209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48570NANA1+28179313..28182845expressed protein
LOC_Os01g48580OsAffx.21504.1.S1_at11/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48580OsAffx.23846.1.A1_at3/111+28184796..28188979ubiquitin-conjugating enzyme E2, putative
LOC_Os01g48590NANA1+28192397..28192723hypothetical protein
LOC_Os01g48600OsAffx.32032.4.S1_s_at11/111+28193682..28194201CDS, putative
LOC_Os01g48610Os.26755.1.S1_at11/111+28195566..28198695expressed protein
LOC_Os01g48620Os.41723.1.S1_at9/111+28202487..28205293expressed protein
LOC_Os01g48629NANA1+28208505..28209076NA
LOC_Os01g48640Os.33639.1.S1_at11/111+28209868..28212916expressed protein
LOC_Os01g48650Os.41248.2.A1_at6/111+28214900..28221119expressed protein
LOC_Os01g48650Os.41248.5.S1_x_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_at5/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.31069.5.S1_x_at3/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.30013.1.S1_x_at1/111+28214900..28221119expressed protein
LOC_Os01g48650OsAffx.23366.1.S1_at1/111+28214900..28221119expressed protein
LOC_Os01g48660Os.32087.1.S2_at11/111+28223202..28226040expressed protein
LOC_Os01g48660Os.32087.1.S1_at11/111+28223202..28226040expressed protein
LOC_Os01g48670OsAffx.19542.3.S1_x_at3/111+28227314..28231536retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41723.1.S1_at--1091--5251Chr01:28204238..28204262 (25 bp)
GAATGACCGTCTTTTCTTTGAGAAG
LOC_Os01g48620
Os.41723.1.S1_at--92--3991Chr01:28204280..28204304 (25 bp)
CGGGATGTACACAGAGCAGCTCTTT
LOC_Os01g48620
Os.41723.1.S1_at--580--2511Chr01:28204355..28204379 (25 bp)
AACATTGTCTTGTGTCTTCACCATT
LOC_Os01g48620
Os.41723.1.S1_at--499--171Chr01:28204377..28204401 (25 bp)
ATTTTGCAGATTCTCCACACCAAGA
LOC_Os01g48620
Os.41723.1.S1_at--598--9731Chr01:28204428..28204452 (25 bp)
TCAATCACCATGCTTATCACTCTAG
LOC_Os01g48620
Os.41723.1.S1_at--1064--9791Chr01:28204465..28204489 (25 bp)
TAACCCCTCTTGTGCTCAACTTTGA
LOC_Os01g48620
Os.41723.1.S1_at--931--6331Chr01:28204562..28204586 (25 bp)
GATGCTAAGGGTTCCTACTTTGATC
LOC_Os01g48620
Os.41723.1.S1_at--884--9891Chr01:28204577..28204601 (25 bp)
TACTTTGATCGCCTTTGTGTTACAT
LOC_Os01g48620
Os.41723.1.S1_at--355--10831Chr01:28204591..28204615 (25 bp)
TTGTGTTACATCTGCGGCTTCTTCA
LOC_Os01g48620
Os.41723.1.S1_at--368--3211Chr01:28205558..28205582 (25 bp)
CAAGGATCGGAGGACCTGCTCAGTC
NONE
Os.41723.1.S1_at--637--771Chr01:28205627..28205651 (25 bp)
ATGTCGCACGCGGATCTTCTTTGGC
NONE
Target Sequence 
GAATGACCGTCTTTTCTTTGAGAAGATCGATATCACTTTATACGGGATGTACACAGAGCAGCTCTTTGAGGCAATATCGA
GGATGGACATGGAAAGCATCATGCTAGTGCTATCAACAACATTGTCTTGTGTCTTCACCATTTTGCAGATTCTCCACACC
AAGAAGAACCCTGAGGTGCCCCCAGCCACATCAATCACCATGCTTATCACTCTAGCCTTGGGGTACTTAACCCCTCTTGT
GCTCAACTTTGAGGCTTTGTTCTTGAGCAGAAGAAAGCAATATGTTCCATTCTTTAGGAACAACCGGGTTGAGTTGAACG
AAGTGATGCTAAGGGTTCCTACTTTGATCGCCTTTGTGTTACATCTGCGGCTTCTTCAGCTGGTTTGTTTTTCTCACCCC
AACCAAATGGTCAAGGATCGGAGGACCTGCTCAGTCCAAACCGGCATTGGCACGGCATGTCGCCGTCTATCTGCTTCACC
ATGTCGCACGCGGATCTTCTTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis