Browse Element(s) Details


Os.38354.1.S1_x_at

Description gb:AK065938.1
DB_XREF= gi:32975956
TID=Os.38354.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045B04, full insert sequence.
FL= gb:AK065938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1125011/11Potassium channel KAT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed
LOC_Os01g11270Os.34503.1.S1_at11/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11270Os.48011.1.S1_x_at2/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11280Os.48011.1.S1_x_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11280Os.48011.1.S1_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11289NANA1+6039507..6039778NA

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009860biological_processpollen tube growth
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38354.1.S1_x_at--152--3971Chr01:6015912..6015936 (25 bp)
CGGAGGCACCGCTTGCAAAAGTTAT
LOC_Os01g11250
Os.38354.1.S1_x_at--546--6791Chr01:6015892..6015916 (25 bp)
GTTATAAATCTACCAGGATCTCTTG
LOC_Os01g11250
Os.38354.1.S1_x_at--1138--7951Chr01:6015877..6015901 (25 bp)
GGATCTCTTGATAAACTTTTCGCCA
LOC_Os01g11250
Os.38354.1.S1_x_at--356--2531Chr01:6015869..6015888 (20 bp)
AACTTTTCGCCATAGCTTGTCAGAA
LOC_Os01g11250
Os.38354.1.S1_x_at--686--3051Chr01:6014812..6014836 (25 bp)
AATCAGGCATGAGGCGACTTGGCAT
LOC_Os01g11250
Os.38354.1.S1_x_at--828--9751Chr01:6014785..6014809 (25 bp)
TAATCAAGAACATGCCACCTAGGGA
LOC_Os01g11250
Os.38354.1.S1_x_at--1155--731Chr01:6014761..6014785 (25 bp)
ATGTTTCGAGTTGCAGTCCTGTAGT
LOC_Os01g11250
Os.38354.1.S1_x_at--682--8751Chr01:6014690..6014714 (25 bp)
TGTAGTCTCTATTCCGCTTTCAAAA
LOC_Os01g11250
Os.38354.1.S1_x_at--890--8551Chr01:6014662..6014686 (25 bp)
TGGATCATGGCAGAGGGCAGCCCTC
LOC_Os01g11250
Os.38354.1.S1_x_at--940--6471Chr01:6014595..6014619 (25 bp)
GATACTAATATCGTTTACAGGTACT
LOC_Os01g11250
Os.38354.1.S1_x_at--30--1011Chr01:6014577..6014601 (25 bp)
AGGTACTTTATAGTGTTTCTCCAAG
LOC_Os01g11250
Target Sequence 
CGGAGGCACCGCTTGCAAAAGTTATAAATCTACCAGGATCTCTTGATAAACTTTTCGCCATAGCTTGTCAGAAGTTTAAC
AATTATCGTCTTACAAAACTTGTCAATCCAGAATTTGCTGAAATTGATGATATTACAGTAATTCGAGATGGTGATCATCT
GTTTTTTTATGGAAATTTGAATAAGGATGCTTGAAATCAGCAACGATGCAAAGAACTGCAGATAGGTATGTAGTATACCT
TTCAGAAGGTACCAGATTAAGATAATAGTGATCACTAATCAGGCATGAGGCGACTTGGCATGATAATCAAGAACATGCCA
CCTAGGGATGTTTCGAGTTGCAGTCCTGTAGTTACATCTAATTTTACTTTAGAATGTAAATGTAGAATTTTGGAGCAATG
TAGTCTCTATTCCGCTTTCAAAATGTTGGATCATGGCAGAGGGCAGCCCTCTATGATCTGTGGAGTTTGTAATGTAGCTA
TAGTGCAACGAAAGATACTAATATCGTTTACAGGTACTTTATAGTGTTTCTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38354.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis