Browse Element(s) Details


Os.48011.1.S1_at

Description gb:NM_188396.1
DB_XREF= gi:34903875
TID=Os.48011.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1128011/11cytochrome P450 family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed
LOC_Os01g11270Os.34503.1.S1_at11/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11270Os.48011.1.S1_x_at2/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11280Os.48011.1.S1_x_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11280Os.48011.1.S1_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11289NANA1+6039507..6039778NA
LOC_Os01g11300Os.43516.1.S1_at11/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11300Os.48011.1.S1_x_at2/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11310OsAffx.9930.1.S1_at8/111+6060281..6060736transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48011.1.S1_at--7--911Chr01:6034721..6034745 (25 bp)
AGGCGAGCCCATCACTGCCGAGATG
LOC_Os01g11280
Os.48011.1.S1_at--826--371Chr01:6034711..6034735 (25 bp)
ATCACTGCCGAGATGATGACGGAGA
LOC_Os01g11280
Os.48011.1.S1_at--375--1991Chr01:6034708..6034732 (25 bp)
ACTGCCGAGATGATGACGGAGATGA
LOC_Os01g11280
Os.48011.1.S1_at--378--4151Chr01:6034665..6034689 (25 bp)
CGCGCGAAGTTGTCCGGTACTGGCC
LOC_Os01g11280
Os.48011.1.S1_at--481--5331Chr01:6034660..6034684 (25 bp)
GAAGTTGTCCGGTACTGGCCTCCAG
LOC_Os01g11280
Os.48011.1.S1_at--144--1251Chr01:6034658..6034682 (25 bp)
AGTTGTCCGGTACTGGCCTCCAGGC
LOC_Os01g11280
Os.48011.1.S1_at--684--6691Chr01:6034649..6034673 (25 bp)
GTACTGGCCTCCAGGCCCGGTGGTG
LOC_Os01g11280
Os.48011.1.S1_at--294--7891Chr01:6034527..6034551 (25 bp)
GGTTCCCCGACGCTGGCACGTTCGA
LOC_Os01g11280
Os.48011.1.S1_at--583--4231Chr01:6034521..6034545 (25 bp)
CCGACGCTGGCACGTTCGACCCGGA
LOC_Os01g11280
Os.48011.1.S1_at--945--10531Chr01:6034378..6034402 (25 bp)
TTCATGGCTCTCTTGGCGTCTCTCA
LOC_Os01g11280
Os.48011.1.S1_at--730--9631Chr01:6034377..6034401 (25 bp)
TCATGGCTCTCTTGGCGTCTCTCAT
LOC_Os01g11280
Target Sequence 
AGGCGAGCCCATCACTGCCGAGATGATGACGGAGATGAAGTACACCCAGGCGGTGGCGCGCGAAGTTGTCCGGTACTGGC
CTCCAGGCCCGGTGGTGCCGCACATCGCCGGCGAGGCGTTCCAGCTGACGGAGCAGTACACTATACCCAAGGGCACCATA
GTGTTCCCGTCGGTGTACGAGTCGTCGTTCCAAGGGTTCCCCGACGCTGGCACGTTCGACCCGGAGCGCTTCTTCTCGGA
GGCGCGGAGGGAGGACGTGGTGTACAAGCGCAACTTCCTCGCGTTCGGCGCCGGCCCGCACCAATGCGTCGGGCAGCGCT
ACGCGCTCAACCACCTCGTCATTTTCATGGCTCTCTTGGCGTCTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis