Browse Element(s) Details


Os.52800.1.S1_at

Description gb:AK069335.1
DB_XREF= gi:32979359
TID=Os.52800.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012A21, full insert sequence.
FL= gb:AK069335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1126011/11Glycosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed
LOC_Os01g11270Os.34503.1.S1_at11/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11270Os.48011.1.S1_x_at2/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11280Os.48011.1.S1_x_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11280Os.48011.1.S1_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11289NANA1+6039507..6039778NA

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0006629biological_processlipid metabolism
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52800.1.S1_at--1031--5071Chr01:6025163..6025187 (25 bp)
GCAGCCTGCAGTGGAATGTTCATTC
LOC_Os01g11260
Os.52800.1.S1_at--292--6291Chr01:6025189..6025213 (25 bp)
GATGTTCATCGCATGCAGCATTTTT
LOC_Os01g11260
Os.52800.1.S1_at--228--3591Chr01:6025207..6025231 (25 bp)
CATTTTTCTTCTTGAGCTGCTCTTG
LOC_Os01g11260
Os.52800.1.S1_at--442--9631Chr01:6025946..6025969 (24 bp)
TCAGGTCCCTTTTCAGATGGCTAAG
LOC_Os01g11260
Os.52800.1.S1_at--281--291Chr01:6025989..6026013 (25 bp)
ATAGATATCCCTTGCGTATTCTTCC
LOC_Os01g11260
Os.52800.1.S1_at--697--10211Chr01:6026005..6026029 (25 bp)
TATTCTTCCCTCGTATTACTTTCTT
LOC_Os01g11260
Os.52800.1.S1_at--671--5431Chr01:6026048..6026072 (25 bp)
GAACCTTATATTGTGGCTGGCGCAT
LOC_Os01g11260
Os.52800.1.S1_at--225--10331Chr01:6026158..6026182 (25 bp)
TTTCATTCTTTTTCTGTCGCTCCTA
LOC_Os01g11260
Os.52800.1.S1_at--901--4771Chr01:6026176..6026200 (25 bp)
GCTCCTACCTTATTCTTTTCAGAAA
LOC_Os01g11260
Os.52800.1.S1_at--1159--8891Chr01:6026336..6026360 (25 bp)
TGAGCTACGTTTTCTGCCTTGCATA
LOC_Os01g11260
Os.52800.1.S1_at--151--5211Chr01:6026363..6026387 (25 bp)
GAATTGTATCCTTTTGTGACCTAAA
LOC_Os01g11260
Target Sequence 
GCAGCCTGCAGTGGAATGTTCATTCCGATGTTCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCA
GGTCCCTTTTCAGATGGCTAAGAAGCACTTCCTTGGGACAAATAGATATCCCTTGCGTATTCTTCCCTCGTATTACTTTC
TTAAGTCGTGGGGTATCAAGGAACCTTATATTGTGGCTGGCGCATACATTATATCATGCCTATTGACGGCATTTGCAGGA
TATCTTGGTCTTGTTTCAGCGTAAGTGGAAGCTTAGGTTACTTACTATTCTTTCATTCTTTTTCTGTCGCTCCTACCTTA
TTCTTTTCAGAAAGTTTGAACCTATAGCATTCTTTTAGAATGGTAGTTACCAAGTGTATGATTCATACAACAAACATAGA
AAATGTAGATATTGGACCTAGTAGGATTCCTAACAATTGTGGGAATTGGGTATTATAGCATGATATCGTGAGCTACGTTT
TCTGCCTTGCATAAAGAATTGTATCCTTTTGTGACCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis