Browse Element(s) Details


Os.31675.2.S1_x_at

Description gb:NM_188388.1
DB_XREF= gi:34903859
TID=Os.31675.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1121010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31675.2.S1_x_at--30--1911Chr01:6000702..6000726 (25 bp)
ACGTCGTCACGGACAGCGCGTCACG
LOC_Os01g11210
Os.31675.2.S1_x_at--508--3471Chr01:6000820..6000844 (25 bp)
CAGGGACCGCGCCACACTGATGGAC
LOC_Os01g11210
Os.31675.2.S1_x_at--360--1971Chr01:6000835..6000859 (25 bp)
ACTGATGGACCTCGTCTTTGAGCAA
LOC_Os01g11210
Os.31675.2.S1_x_at--695--2831Chr01:6000858..6000995 (25 bp)
AAGTCACCAAGGAGCAAATCGGCGA
LOC_Os01g11210
Os.31675.2.S1_x_at--964--9331Chr01:6001039..6001063 (25 bp)
TCGCGCGATTCCGAGAGGAAGCTTG
LOC_Os01g11210
Os.31675.2.S1_x_at--106--8191Chr01:6001055..6001079 (25 bp)
GGAAGCTTGACCTGGGCTTGCTGCT
LOC_Os01g11210
Os.31675.2.S1_x_at--461--9111Chr01:6001073..6001097 (25 bp)
TGCTGCTCACTGACGTACTGATCAA
LOC_Os01g11210
Os.31675.2.S1_x_at--249--7011NONE
GTACTGATCAACCAGGCTGTCATCA
NONE
Os.31675.2.S1_x_at--614--851Chr01:6001427..6001451 (25 bp)
ATGGCAGTGGAGACCATGCTTTCTC
LOC_Os01g11210
Os.31675.2.S1_x_at--951--3511Chr01:6001441..6001465 (25 bp)
CATGCTTTCTCCTGAAACAGCCAAT
LOC_Os01g11210
Os.31675.2.S1_x_at--551--3291Chr01:6001488..6001512 (25 bp)
CAAAGAATGCCATGGACGCGTGGAA
LOC_Os01g11210
Target Sequence 
ACGTCGTCACGGACAGCGCGTCACGCGCCACCGCGGAACGGAGCGCCGCCGCCGCGGCCACCATGAGGACGAGCGTGGAC
GCGCTCTCCGACTCGCTGTTCCGGCGCGAGGACGCGCCCAGGGACCGCGCCACACTGATGGACCTCGTCTTTGAGCAAGT
CACCAAGGAGCAAATCGGCGACAGGGGAAAGCTGACGAGCTTGCTGCAGAAGGAGTGGTCGGCGTCGCGCGATTCCGAGA
GGAAGCTTGACCTGGGCTTGCTGCTCACTGACGTACTGATCAACCAGGCTGTCATCAACATGATGATGGCAGTGGAGACC
ATGCTTTCTCCTGAAACAGCCAATAGTGACGACATTGAGAAGATGTCAAAGAATGCCATGGACGCGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31675.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis