Browse Element(s) Details


Os.12788.1.S1_at

Description gb:AK060099.1
DB_XREF= gi:32970117
TID=Os.12788.1
CNT=56
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H01, full insert sequence.
FL= gb:AK119774.1 gb:AK060099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein
LOC_Os01g11250Os.38354.1.S1_x_at11/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.1.S1_at10/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11250Os.38354.2.A1_x_at3/111+6014544..6018924Potassium channel KAT1, putative, expressed
LOC_Os01g11260Os.52800.1.S1_at11/111+6021876..6026442Glycosyl transferase family protein, expressed
LOC_Os01g11270Os.34503.1.S1_at11/111+6027827..6029635cytochrome P450 family protein, putative, expressed
LOC_Os01g11270Os.48011.1.S1_x_at2/111+6027827..6029635cytochrome P450 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12788.1.S1_at--118--7671Chr01:6007973..6007997 (25 bp)
GGTTAACTACCCTCTTAATTGATAT
LOC_Os01g11240
Os.12788.1.S1_at--863--10171Chr01:6007874..6007898 (25 bp)
TATACTCGTGTGTCACCTATCCTAT
LOC_Os01g11240
Os.12788.1.S1_at--1147--7651Chr01:6007826..6007850 (25 bp)
GGGATTAATCTTGTGAACCTTACAG
LOC_Os01g11240
Os.12788.1.S1_at--810--5431Chr01:6007812..6007836 (25 bp)
GAACCTTACAGTAGCATCACGAGAA
LOC_Os01g11240
Os.12788.1.S1_at--388--6951Chr01:6007787..6007811 (25 bp)
GTAGATGACTACCTGAACGATGTTC
LOC_Os01g11240
Os.12788.1.S1_at--880--5511Chr01:6007748..6007772 (25 bp)
GAAAATCTTCTCTTGGCCGTAATTA
LOC_Os01g11240
Os.12788.1.S1_at--360--8411Chr01:6007734..6007758 (25 bp)
GGCCGTAATTATAATTCCTACTCCA
LOC_Os01g11240
Os.12788.1.S1_at--664--1991Chr01:6007715..6007739 (25 bp)
ACTCCATCTACAGTTGTATTCGCAG
LOC_Os01g11240
Os.12788.1.S1_at--275--7931Chr01:6007631..6007655 (25 bp)
GGATTGAACGGACTGTGACCCTTTT
LOC_Os01g11240
Os.12788.1.S1_at--384--7331Chr01:6007617..6007641 (25 bp)
GTGACCCTTTTAGCCGCGAAGAGTT
LOC_Os01g11240
Os.12788.1.S1_at--625--2991Chr01:6007560..6007584 (25 bp)
AATGATGTCCTGTGATCTTACTTAA
LOC_Os01g11240
Target Sequence 
GGTTAACTACCCTCTTAATTGATATACTTAGTCTTCTAAATAAAATCACGGCTGCTGTATTACTACTACTACTCTGCTCC
GGTTTTTCACCGAGAGCGTTATACTCGTGTGTCACCTATCCTATTTTTTTGTCTGTTTTATCAAGCGGGGATTAATCTTG
TGAACCTTACAGTAGCATCACGAGAAGTAGATGACTACCTGAACGATGTTCATGATTTTAGACTTGAAAATCTTCTCTTG
GCCGTAATTATAATTCCTACTCCATCTACAGTTGTATTCGCAGACAAGAGTAGCTGTCGTATTTAAACATGTTGCTGGTG
AGAAATTTATGGCTAAATAGACGGATTGAACGGACTGTGACCCTTTTAGCCGCGAAGAGTTTGGCATAAATTTGTACTGT
AGGGAACATGATTAATGATGTCCTGTGATCTTACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis