Browse Element(s) Details


Os.30473.1.S1_at

Description gb:AK108802.1
DB_XREF= gi:32994011
TID=Os.30473.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C10, full insert sequence.
FL= gb:AK108802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1115011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11130Os.34147.1.S1_at10/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11130Os.34147.2.S1_x_at9/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11140NANA1+5958496..5962542retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g11150Os.30473.1.S1_at11/111+5965621..5969291oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30473.1.S1_at--925--7571Chr01:5966672..5966696 (25 bp)
GGGCTGGAGATCTCCCTCCGTGACG
LOC_Os01g11150
Os.30473.1.S1_at--560--1451Chr01:5966004..5966028 (25 bp)
AGAAGTCGAGGGTGTCCATGGTCTT
LOC_Os01g11150
Os.30473.1.S1_at--447--4231Chr01:5965851..5965875 (25 bp)
CCGACGACAGGCTCTGCAGATTTGA
LOC_Os01g11150
Os.30473.1.S1_at--444--2031Chr01:5965824..5965848 (25 bp)
ACTAGTAGTAGCAGTCATCTGACTT
LOC_Os01g11150
Os.30473.1.S1_at--666--471Chr01:5965808..5965832 (25 bp)
ATCTGACTTCTATGTACGTTTGTGT
LOC_Os01g11150
Os.30473.1.S1_at--992--151Chr01:5965763..5965787 (25 bp)
ATTATCACTGTGGTTTGCCTCTAGC
LOC_Os01g11150
Os.30473.1.S1_at--978--10691Chr01:5965749..5965773 (25 bp)
TTGCCTCTAGCAATAGCCTTGTACG
LOC_Os01g11150
Os.30473.1.S1_at--324--3091Chr01:5965738..5965762 (25 bp)
AATAGCCTTGTACGTAAATTTCAGT
LOC_Os01g11150
Os.30473.1.S1_at--970--2691Chr01:5965691..5965715 (25 bp)
AAGCTTCCAGCAAAAGTTGCATGCA
LOC_Os01g11150
Os.30473.1.S1_at--1124--4971Chr01:5965669..5965693 (25 bp)
GCATGTAAGTGCTCTGTGGACAGTT
LOC_Os01g11150
Os.30473.1.S1_at--735--4811Chr01:5965622..5965646 (25 bp)
GCTCTCTTAAGATGATGGTTGCTAG
LOC_Os01g11150
Target Sequence 
GGGCTGGAGATCTCCCTCCGTGACGGCGCCNGGGCGTCCGTGCCGCACGACGGCGACGGCGACTCCTTTTTCGTCAACGT
CGGCGACACCCTCCAGGTGCTAACGAACGGGAGGTTCAGGAGCGTGAAGCACAGGGTGGTGGTGAACAGCGAGAAGTCGA
GGGTGTCCATGGTCTTCTTCGGCGGCCCGCCGCCCGGCGAGAGGCTGGCGCCGCTGCCGGCGTTATTAGGGGACGGCGGC
CGGAGCCGGTACAGGGAGTTCACCTGGAAGGAGTACAAGGGCAGCGGCTGCAAGGGCCGGCTCGCCGACGACAGGCTCTG
CAGATTTGAGAACTAGTAGTAGCAGTCATCTGACTTCTATGTACGTTTGTGTATATTAATTCGCAAGTAGTGATTATCAC
TGTGGTTTGCCTCTAGCAATAGCCTTGTACGTAAATTTCAGTATGTGTTAATCTGTTTATATATAAGCTTCCAGCAAAAG
TTGCATGCATGTAAGTGCTCTGTGGACAGTTTAGTTTTATTACAATTAAATGAGCTCTCTTAAGATGATGGTTGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis