Browse Element(s) Details


Os.34147.1.S1_at

Description gb:AK072686.1
DB_XREF= gi:32982709
TID=Os.34147.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139J22, full insert sequence.
FL= gb:AK072686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1113010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed
LOC_Os01g11120Os.27489.2.A1_x_at11/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.1.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.2.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.11302.1.S1_at1/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11130Os.34147.1.S1_at10/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11130Os.34147.2.S1_x_at9/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11140NANA1+5958496..5962542retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g11150Os.30473.1.S1_at11/111+5965621..5969291oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34147.1.S1_at--20--6991Chr01:5943009..5943033 (25 bp)
GTACCCTAGAGGATTGTCACAGCAC
LOC_Os01g11130
Os.34147.1.S1_at--410--311Chr01:5942965..5942989 (25 bp)
ATACCATGAATTGCTGCTGTTCCCA
LOC_Os01g11130
Os.34147.1.S1_at--67--7391Chr01:5942890..5942914 (25 bp)
GTGACCATAGCTACATGTCTACTGG
LOC_Os01g11130
Os.34147.1.S1_at--1055--1611Chr01:5942823..5942847 (25 bp)
AGCTGGTATGGTAGGCACATCGCCC
LOC_Os01g11130
Os.34147.1.S1_at--359--10651Chr01:5942790..5942814 (25 bp)
TTCGCCACCTGTTCATTACAATGAC
LOC_Os01g11130
Os.34147.1.S1_at--193--6111Chr01:5942733..5942757 (25 bp)
GAGTCCACAGGTTGATCATACATAC
LOC_Os01g11130
Os.34147.1.S1_at--419--751Chr01:5942705..5942729 (25 bp)
ATGTACTCGCTGTTCTGACGACCTG
LOC_Os01g11130
Os.34147.1.S1_at--893--2431Chr01:5942492..5942516 (25 bp)
AACAATCCGTTGTAGTGCGTTGCCA
LOC_Os01g11130
Os.34147.1.S1_at--749--1131Chr01:5942479..5942503 (25 bp)
AGTGCGTTGCCATTGCTGTACAGAT
LOC_Os01g11130
Os.34147.1.S1_at--1071--8451Chr01:5942455..5942479 (25 bp)
TGGCCTCCATTTCTTACATCTTGAT
LOC_Os01g11130
Os.34147.1.S1_at--902--10771Chr01:5942435..5942459 (25 bp)
TTGATGTCCTTGTTCTTGTGTTTCT
NONE
Target Sequence 
GTACCCTAGAGGATTGTCACAGCACACGGTGGGTCGGATTGAAAATACCATGAATTGCTGCTGTTCCCATCCATCTGTCA
GTGGCATAGCAAATCACAAGCCTGAATACTGGAGTGGAAGTGACCATAGCTACATGTCTACTGGGGGATATGATGTATTC
AGTCAAAGTGCAACATTAGGCATGATAGCTGGTATGGTAGGCACATCGCCCCAACAACCTTCGCCACCTGTTCATTACAA
TGACTGGACCACGGGAAGTGCTGATTCAGATTTGAAGAGTCCACAGGTTGATCATACATACCCCATGTACTCGCTGTTCT
GACGACCTGGCGGAGTTTGCCTTCGCAACCCCTAACAATAGATGTACAAGTAAAATGCATACCTGCTAATCTAGCTTGCA
AAATGGTGGGTGGTAGCGACATTGGCAACGAAAATGCTTCGTCTGCTGAAGCTTGTAAAGACCAAATGTGGAGCTTCATG
TACAAAAATTAGAGTACTTGTGAACATTTGGTCATGGAACAATCCGTTGTAGTGCGTTGCCATTGCTGTACAGATGGCCT
CCATTTCTTACATCTTGATGTCCTTGTTCTTGTGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis