Browse Element(s) Details


Os.27489.1.A1_at

Description gb:AK103702.1
DB_XREF= gi:32988911
TID=Os.27489.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ATT4F9_7(AL049523|pid:g4539439) Arabidopsis thaliana DNA chromosome 4, BAC cloneT4F9; RNA-binding protein (OSJNBa0016I09.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136L22, full insert sequence.
FL= gb:AK103702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1112010/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11070Os.17532.1.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_s_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11080OsAffx.9938.1.S1_at11/111+5914965..5916014Transposable element protein, putative, Retrotrans_gag
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed
LOC_Os01g11120Os.27489.2.A1_x_at11/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.1.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.2.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.11302.1.S1_at1/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11130Os.34147.1.S1_at10/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11130Os.34147.2.S1_x_at9/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11140NANA1+5958496..5962542retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27489.1.A1_at--409--2531NONE
AACTTTGTGGTGAGGTCTCTCGTTT
NONE
Os.27489.1.A1_at--1104--6071Chr01:5931915..5932098 (25 bp)
GAGTTTGTCCATGCCGAGTGTGCCA
LOC_Os01g11120
Os.27489.1.A1_at--1082--711Chr01:5931867..5931891 (25 bp)
ATGATTTTGGGTACACTGCCTGTCA
LOC_Os01g11120
Os.27489.1.A1_at--1082--8911Chr01:5931756..5931780 (25 bp)
TGAGCCCTTCTAAGACACCGGTGAA
LOC_Os01g11120
Os.27489.1.A1_at--1118--6111Chr01:5931717..5931741 (25 bp)
GAGTGGCGTCGAACTGACCGCTTGA
LOC_Os01g11120
Os.27489.1.A1_at--706--8191Chr01:5931672..5931696 (25 bp)
GGAAGATCGCTTAACCATCACCTAT
LOC_Os01g11120
Os.27489.1.A1_at--621--8851Chr01:5931623..5931647 (25 bp)
TGATGCTTTTTTCATTCACCCCTTT
LOC_Os01g11120
Os.27489.1.A1_at--352--7651Chr01:5931557..5931581 (25 bp)
GGGAGTCCGAGTCAGCATCTATGTC
LOC_Os01g11120
Os.27489.1.A1_at--463--1231Chr01:5931482..5931506 (25 bp)
AGATTAATTTCTTTGGCTCCCGATT
LOC_Os01g11120
Os.27489.1.A1_at--690--10671Chr01:5931453..5931477 (25 bp)
TTCCTTCTTTTTCTCAGTGCTACAA
LOC_Os01g11120
Os.27489.1.A1_at--963--2571Chr01:5931405..5931429 (25 bp)
AACGTCTTTAGTCTTCACTTGAGGA
LOC_Os01g11120
Target Sequence 
AACTTTGTGGTGAGGTCTCTCGTTTGAGACTTCTAGGGGATAATGNACATTCTACAAGGATTGCTTTTGTTGAGTTTGTC
CATGCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGGGTGAGCCCTTCTAA
GACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCG
CTTAACCATCACCTATAGCCTTCCGCGATCCAGCGAATTGTGATGCTTTTTTCATTCACCCCTTTTGTCGAAAACTGTTG
GAAGGAACTGGTTAAATCAGATCCTTGGGAGTCCGAGTCAGCATCTATGTCTGAGAGTTTATTCATCATGATGGAGAACA
ACCAATAGACTATCCGCCACTAGATTAATTTCTTTGGCTCCCGATTTTTTTTCCTTCTTTTTCTCAGTGCTACAACTGTT
AAAACTGAATCGATATTTAACGTCTTTAGTCTTCACTTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27489.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis