Browse Element(s) Details


Os.27489.2.A1_at

Description gb:NM_188374.1
DB_XREF= gi:34903831
GEN=OSJNBa0016I09.30
TID=Os.27489.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27489 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ATT4F9_7(AL049523|pid:g4539439) Arabidopsis thaliana DNA chromosome 4, BAC cloneT4F9; RNA-binding protein (OSJNBa0016I09.30), mRNA.
PROD=ATT4F9_7(AL049523|pid:g4539439) Arabidopsisthaliana DNA chromosome 4, BAC cloneT4F9; RNA-bindingprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1112010/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11070Os.17532.1.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_s_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11080OsAffx.9938.1.S1_at11/111+5914965..5916014Transposable element protein, putative, Retrotrans_gag
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed
LOC_Os01g11120Os.27489.2.A1_x_at11/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.1.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.2.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.11302.1.S1_at1/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11130Os.34147.1.S1_at10/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11130Os.34147.2.S1_x_at9/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11140NANA1+5958496..5962542retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27489.2.A1_at--410--2531NONE
AACTTTGTGGTGAGAGGCATAGGGT
NONE
Os.27489.2.A1_at--1098--911Chr01:5932583..5932607 (25 bp)
AGGCATAGGGTCTGCTCGGCTGCCT
LOC_Os01g11120
Os.27489.2.A1_at--1025--4951Chr01:5932581..5932605 (25 bp)
GCATAGGGTCTGCTCGGCTGCCTTT
LOC_Os01g11120
Os.27489.2.A1_at--263--271Chr01:5932579..5932603 (25 bp)
ATAGGGTCTGCTCGGCTGCCTTTGC
LOC_Os01g11120
Os.27489.2.A1_at--247--7811Chr01:5932575..5932599 (25 bp)
GGTCTGCTCGGCTGCCTTTGCTGTT
LOC_Os01g11120
Os.27489.2.A1_at--707--9091Chr01:5932571..5932595 (25 bp)
TGCTCGGCTGCCTTTGCTGTTGTTG
LOC_Os01g11120
Os.27489.2.A1_at--700--9111Chr01:5932528..5932552 (25 bp)
TGCTGCTACTGCCAGCATCTGTGGC
LOC_Os01g11120
Os.27489.2.A1_at--942--9911Chr01:5932522..5932546 (25 bp)
TACTGCCAGCATCTGTGGCCCTCAA
LOC_Os01g11120
Os.27489.2.A1_at--56--9191Chr01:5932519..5932543 (25 bp)
TGCCAGCATCTGTGGCCCTCAACGG
LOC_Os01g11120
Os.27489.2.A1_at--294--491Chr01:5932512..5932536 (25 bp)
ATCTGTGGCCCTCAACGGCAGCAGG
LOC_Os01g11120
Os.27489.2.A1_at--536--9471Chr01:5932511..5932535 (25 bp)
TCTGTGGCCCTCAACGGCAGCAGGT
LOC_Os01g11120
Target Sequence 
AACTTTGTGGTGAGAGGCATAGGGTCTGCTCGGCTGCCTTTGCTGTTGTTGGCTTGTTGCTGCTGTGGCTGCTGCTACTG
CCAGCATCTGTGGCCCTCAACGGCAGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27489.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis