Browse Element(s) Details


Os.34147.2.S1_x_at

Description gb:NM_188377.1
DB_XREF= gi:34903837
TID=Os.34147.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g111309/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed
LOC_Os01g11120Os.27489.2.A1_x_at11/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.1.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.2.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.11302.1.S1_at1/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11130Os.34147.1.S1_at10/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11130Os.34147.2.S1_x_at9/111+5942435..5951189RNA recognition motif family protein, expressed
LOC_Os01g11140NANA1+5958496..5962542retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g11150Os.30473.1.S1_at11/111+5965621..5969291oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34147.2.S1_x_at--795--10031Chr01:5947419..5947443 (25 bp)
TAGACCCATATAGTGTTCGTGTGAT
LOC_Os01g11130
Os.34147.2.S1_x_at--1115--9411Chr01:5947403..5947427 (25 bp)
TCGTGTGATTCAACGCAGGCTTGTT
LOC_Os01g11130
Os.34147.2.S1_x_at--815--7971Chr01:5947368..5947392 (25 bp)
GGATGCCTTCTGAATTCGCGAGTGA
LOC_Os01g11130
Os.34147.2.S1_x_at--607--5711NONE
GACTCTGGCCGTGTATATGTTACCT
NONE
Os.34147.2.S1_x_at--288--1451Chr01:5946381..5946405 (25 bp)
AGAAGCTTTTCGGTGCATTGAGGCA
LOC_Os01g11130
Os.34147.2.S1_x_at--325--2931NONE
AAGGCAACTTTTGGCGTTACAAGAT
NONE
Os.34147.2.S1_x_at--196--2371Chr01:5946070..5946094 (25 bp)
AAAGCCAATCTGTTCGTACGTGCAT
LOC_Os01g11130
Os.34147.2.S1_x_at--356--2351Chr01:5946042..5946066 (25 bp)
AAAGCCCCACCAGAAGATATTTGTA
LOC_Os01g11130
Os.34147.2.S1_x_at--885--5771Chr01:5946012..5946036 (25 bp)
GACGATGTCGCTGTGTACTGTGCAA
LOC_Os01g11130
Os.34147.2.S1_x_at--1122--6991Chr01:5945998..5946022 (25 bp)
GTACTGTGCAAGGTGCATATTGCTA
LOC_Os01g11130
Os.34147.2.S1_x_at--26--6551Chr01:5945944..5945968 (25 bp)
GATTTATTTCATGGTCATTTGTCAT
LOC_Os01g11130
Target Sequence 
TAGACCCATATAGTGTTCGTGTGATTCAACGCAGGCTTGTTTATATTGTTGGGATGCCTTCTGAATTCGCGAGTGACAAG
GTGCTGAGGCAGCATAATTTTCTTGGGCAATATGGAAAAATAGAAAGTATTATTATCGACAATATTGGAGCTAACCAACA
GATTCCTGACTCTGGCCGTGTATATGTTACCTTTTCAAGGGAGGAAGAAGCTTTTCGGTGCATTGAGGCAGTTAATGGTT
TCATCTTGGATGGTAGACCTCTAAAGGCAACTTTTGGCGTTACAAGATATTGTCATGTATGGCTAAGCAATAAGGTTTGC
CGAAAGCCAATCTGTTCGTACGTGCATCAAAAAGCCCCACCAGAAGATATTTGTACGAAGGACGATGTCGCTGTGTACTG
TGCAAGGTGCATATTGCTAATGCATTTTTTGATAGGCATGTGGAATTTGATTTATTTCATGGTCATTTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34147.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis