Browse Element(s) Details


OsAffx.17738.1.S1_at

Description tigr:9637.m01364
TID=OsAffx.17738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1631011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16290OsAffx.29871.3.S1_at11/119+9944092..9952453ABC transporter family protein
LOC_Os09g16290Os.55739.1.S1_x_at1/119+9944092..9952453ABC transporter family protein
LOC_Os09g16300NANA9+9957668..9958374hypothetical protein
LOC_Os09g16310OsAffx.17738.1.S1_at11/119+9960354..9962582hypothetical protein
LOC_Os09g16320NANA9+9967753..9968102hypothetical protein
LOC_Os09g16330OsAffx.29871.1.S1_x_at11/119+9969573..9978350PDR5-like ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17738.1.S1_at--1088--9151Chr09:9962217..9962241 (25 bp)
TGCCGCTTCCGAACACGAAACCTGA
LOC_Os09g16310
OsAffx.17738.1.S1_at--445--2171Chr09:9962229..9962253 (25 bp)
ACACGAAACCTGAGCAGTACGCCAT
LOC_Os09g16310
OsAffx.17738.1.S1_at--387--1671Chr09:9962310..9962334 (25 bp)
AGCCGCATCAACTACTCAGAGCAGG
LOC_Os09g16310
OsAffx.17738.1.S1_at--290--9911Chr09:9962322..9962346 (25 bp)
TACTCAGAGCAGGAGTGCGCCATCG
LOC_Os09g16310
OsAffx.17738.1.S1_at--805--7291Chr09:9962336..9962360 (25 bp)
GTGCGCCATCGACAGCAAGGAACTG
LOC_Os09g16310
OsAffx.17738.1.S1_at--486--6491Chr09:9962377..9962401 (25 bp)
GATACCTTGCCAGTGGTGCGGAACG
LOC_Os09g16310
OsAffx.17738.1.S1_at--666--2591Chr09:9962398..9962422 (25 bp)
AACGCCACCGCATCAACTACTATGA
LOC_Os09g16310
OsAffx.17738.1.S1_at--580--2011Chr09:9962413..9962437 (25 bp)
ACTACTATGAGCAAGATTCGCCGTC
LOC_Os09g16310
OsAffx.17738.1.S1_at--407--10651Chr09:9962429..9962453 (25 bp)
TTCGCCGTCGACAGCAAGGAACCAG
LOC_Os09g16310
OsAffx.17738.1.S1_at--307--2931Chr09:9962444..9962468 (25 bp)
AAGGAACCAGCTCGGTATCGCGCAC
LOC_Os09g16310
OsAffx.17738.1.S1_at--721--3232Chr09:9962486..9962510 (25 bp)
CAAGCAGGAGTGTGCTGTCAGCAGC
LOC_Os09g16310
Target Sequence 
TGCCGCTTCCGAACACGAAACCTGAGCAGTACGCCATCAACAGCAAAACAAACGGCACACCGCCGTACGCAATACCTCGC
CGGCGGCGCTCACAGCCGCATCAACTACTCAGAGCAGGAGTGCGCCATCGACAGCAAGGAACTGGCGCGCCTCCACATGC
GATACCTTGCCAGTGGTGCGGAACGCCACCGCATCAACTACTATGAGCAAGATTCGCCGTCGACAGCAAGGAACCAGCTC
GGTATCGCGCACCGCCGCAACAACTACACCAAGCAGGAGTGTGCTGTCAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis