Browse Element(s) Details


OsAffx.29871.1.S1_x_at

Description tigr:9637.m01366
TID=OsAffx.29871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1633011/11PDR5-like ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16290OsAffx.29871.3.S1_at11/119+9944092..9952453ABC transporter family protein
LOC_Os09g16290Os.55739.1.S1_x_at1/119+9944092..9952453ABC transporter family protein
LOC_Os09g16300NANA9+9957668..9958374hypothetical protein
LOC_Os09g16310OsAffx.17738.1.S1_at11/119+9960354..9962582hypothetical protein
LOC_Os09g16320NANA9+9967753..9968102hypothetical protein
LOC_Os09g16330OsAffx.29871.1.S1_x_at11/119+9969573..9978350PDR5-like ABC transporter, putative, expressed
LOC_Os09g16340NANA9+9989624..9990765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16350Os.27691.1.S1_x_at1/119+9991016..9994306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16360NANA9+9994379..9995581retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16370NANA9+10002548..10004233hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29871.1.S1_x_at--568--3371Chr09:9970681..9970705 (25 bp)
CAGCCAGTTGTGTCTGTTGAACGCA
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--992--5931Chr09:9970638..9970662 (25 bp)
GAGCAGCTCACATGTATTCACCTTT
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--758--10271Chr09:9970617..9970640 (24 bp)
TTTGCCATACGCCTTGGGACAGGTT
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--865--331Chr09:9970303..9970327 (25 bp)
ATACATCCTTGTTCAGTCCTTAATA
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--762--8891Chr09:9970246..9970270 (25 bp)
TGAGTGGACAGCTGCCAAGTTCTTT
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--839--7731Chr09:9970162..9970186 (25 bp)
GGTGGGTCTGACTCCAAGCTATAAC
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--985--2691Chr09:9970147..9970171 (25 bp)
AAGCTATAACGTGGCCTCTGTTGTT
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--768--9451Chr09:9970131..9970155 (25 bp)
TCTGTTGTTTCCACTGCATTCTATG
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--508--4671Chr09:9969929..9969953 (25 bp)
GCGTGGACACTCTACGGGTTGGTAA
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--975--10851Chr09:9969832..9969856 (25 bp)
TTGGTTACCATCGTGACTTCTTGTG
LOC_Os09g16330
OsAffx.29871.1.S1_x_at--880--7391Chr09:9969797..9969821 (25 bp)
GTGATGGTGGTCTCATTTGCCGTCC
LOC_Os09g16330
Target Sequence 
CAGCCAGTTGTGTCTGTTGAACGCACTGTGTTCTACAGGGAACGAGCAGCTCACATGTATTCACCTTTGCCATACGCCTT
GGGACAGGTTGCAATTGAACTTCCATACATCCTTGTTCAGTCCTTAATATATGGTGTTCTAGTGTATGCAATGATTGGAT
TTGAGTGGACAGCTGCCAAGTTCTTTTGGTACCTGTTTTTCATGTATTTCACTTTATCATACTACACATTTTATGGCATG
ATGTCGGTGGGTCTGACTCCAAGCTATAACGTGGCCTCTGTTGTTTCCACTGCATTCTATGCCATATGGAACCTTTTCTC
AGGATTTATAATACCAAGAACTCGAATTCCAATATGGTGGAGATGGTACTATTGGGTCTGCCCTGTTGCGTGGACACTCT
ACGGGTTGGTAACTTCACAGTTCGGGGATGTAACTGACACGTTTGATAATGGTGTCCGTATATCTGACTTTGTCGAGAGC
TACTTTGGTTACCATCGTGACTTCTTGTGGGTGGTTGCCGTGATGGTGGTCTCATTTGCCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29871.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis