Browse Element(s) Details


OsAffx.17770.1.S1_x_at

Description tigr:9637.m01576
TID=OsAffx.17770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1831010/11retrotransposon, putative, centromere-specific
LOC_Os09g182005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g180801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g228401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18260OsAffx.17769.1.S1_at11/119+11206999..11212451Protein kinase domain containing protein
LOC_Os09g18270NANA9+11215489..11216154transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18280NANA9+11217863..11218896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18290NANA9+11219542..11220242hypothetical protein
LOC_Os09g18300OsAffx.29910.1.S1_at11/119+11225371..11225772hypothetical protein
LOC_Os09g18310OsAffx.17770.1.S1_x_at10/119+11231463..11232157retrotransposon, putative, centromere-specific
LOC_Os09g18320Os.18949.1.S1_at10/119+11235232..11239921Bystin family protein, expressed
LOC_Os09g18330OsAffx.29913.1.S1_at11/119+11246739..11247256hypothetical protein
LOC_Os09g18340NANA9+11249798..11252334transposon protein, putative, unclassified
LOC_Os09g18350NANA9+11253661..11254530retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17770.1.S1_x_at--913--5332Chr09:11232098..11232122 (25 bp)
GAAGTTAGACTTTGGATCTGAATCC
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--820--471NONE
ATCTGAATCCTTTCGGAAGAGAGAT
NONE
OsAffx.17770.1.S1_x_at--515--9372Chr09:11232085..11232106 (22 bp)
TCTGAATCCTTTCGGAAGAGAGATT
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--1043--5231Chr09:11231601..11232103 (25 bp)
GAATCCTTTCGGAAGAGAGATTTGG
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--1137--5351Chr09:11231826..11232092 (25 bp)
GAAGAGAGATTTGGAGCCATACTTG
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--318--5932Chr09:11231823..11231844 (22 bp)
GAGAGATTTGGAGCCATACTTGGGA
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--110--10752Chr09:11231785..11231809 (25 bp)
TTGAGTCGAGGACGAGTTCAGTTCA
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--194--8112Chr09:11231776..11231800 (25 bp)
GGACGAGTTCAGTTCAAGAGGAGGA
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--588--3954Chr09:11231743..11231767 (25 bp)
CGGACATCACTCTTTCGGATACACA
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--370--4791Chr09:11231678..11231702 (25 bp)
GCTCGTACGCGACAATTGAATTTAA
LOC_Os09g18310
OsAffx.17770.1.S1_x_at--588--3472Chr09:11231562..11231586 (25 bp)
CAGGGAGACATGTGGAGAAGGACTT
LOC_Os09g18310
Target Sequence 
GAAGTTAGACTTTGGATCTGAATCCTTTCGGAAGAGAGATTTGGAGCCATACTTGGGAGAAGAAGATGAGCTTGAGTCGA
GGACGAGTTCAGTTCAAGAGGAGGAGGATGATGCGGACATCACTCTTTCGGATACACACAACAATCCTCCAACGGTCATA
CAAGGACCGATAACAAGAGCTCGTACGCGACAATTGAATTTAAAGGAATTTGAGAATAGATTGCTACCTAATGATTATAT
TGTGATTTGGATCAATGGAGGGGACAGGGAGACATGTGGAGAAGGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17770.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis