Browse Element(s) Details


OsAffx.17778.2.S1_at

Description tigr:9634.m02160
TID=OsAffx.17778.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2204011/11hypothetical protein
LOC_Os06g345642/11Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os05g207702/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22020OsAffx.15546.1.S1_at11/116+12750746..12752287Cytochrome P450 71C4, putative
LOC_Os06g22030Os.16446.1.S1_at11/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22030Os.40082.1.A1_x_at2/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22040OsAffx.17778.2.S1_at11/116+12772279..12773486hypothetical protein
LOC_Os06g22040OsAffx.6537.1.S1_at2/116+12772279..12773486hypothetical protein
LOC_Os06g22050OsAffx.4897.1.S1_at11/116+12780812..12781501hypothetical protein
LOC_Os06g22060Os.5654.1.S1_at11/116+12793243..12799337Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17778.2.S1_at--982--7131Chr06:12772503..12772527 (25 bp)
GTCTTCGATCGGCAGCATAGCGATC
LOC_Os06g22040
OsAffx.17778.2.S1_at--59--6411Chr06:12772509..12772533 (25 bp)
GATCGGCAGCATAGCGATCCTCGCA
LOC_Os06g22040
OsAffx.17778.2.S1_at--216--10671Chr06:12772541..12772781 (25 bp)
TTCCACTGGTCGAGGTCTTCTGCCA
LOC_Os06g22040
OsAffx.17778.2.S1_at--638--6571Chr06:12772792..12772816 (25 bp)
GATTCTCCCACAACCTATGCAATTT
LOC_Os06g22040
OsAffx.17778.2.S1_at--407--2632Chr06:12772803..12772827 (25 bp)
AACCTATGCAATTTGTTGGGCACAA
LOC_Os06g22040
OsAffx.17778.2.S1_at--457--6636Chr08:14367175..14367199 (25 bp)
GTTGGGCACAACTATACACCTGGTC
NONE
OsAffx.17778.2.S1_at--101--86512Chr12:16737964..16737983 (20 bp)
TGGGCACAACTATACACCTGGTCTT
NONE
OsAffx.17778.2.S1_at--2--7174Chr08:14367220..14367243 (24 bp)
GTCTCATCATCTACGTCAATTTCTA
NONE
OsAffx.17778.2.S1_at--52--9933Chr08:14367230..14367257 (25 bp)
TACGTCAATTTCTAGATCCCTTACC
NONE
OsAffx.17778.2.S1_at--682--7073Chr08:14367233..14367260 (25 bp)
GTCAATTTCTAGATCCCTTACCACG
NONE
OsAffx.17778.2.S1_at--355--2451Chr06:12773424..12773448 (25 bp)
AAAATTCAATTCAACGCTGTCGAGG
LOC_Os06g22040
Target Sequence 
GTCTTCGATCGGCAGCATAGCGATCCTCGCACCACAACTTCCACTGGTCGAGGTCTTCTGCCAGCGATGTAGCGATTCTC
CCACAACCTATGCAATTTGTTGGGCACAACTATACACCTGGTCTTTGCCCAGTGTGATGGTCGTCTCATCATCTACGTCA
ATTTCTAGATCCCTTACCACGATAACACCTACTCTTGAAATCGAACCTATTGACCCTTTACACCGTTCCGACAAGCCTCC
GAGAGACCTACGGGAATTTCGGCTGGGGACGCCCAGAGCGGATAAGGTCTTGTCAGACTCTGAGAGCCGAACAACCATGA
AAATTCAATTCAACGCTGTCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17778.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis