Browse Element(s) Details


Os.5654.1.S1_at

Description gb:CB667878
DB_XREF= gi:29671603
DB_XREF=OSJNEd15G19.r
CLONE=OSJNEd15G19
TID=Os.5654.1
CNT=33
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.5654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001I21, full insert sequence
FL= gb:AK121116.1 gb:AK065052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2206011/11Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22040OsAffx.17778.2.S1_at11/116+12772279..12773486hypothetical protein
LOC_Os06g22040OsAffx.6537.1.S1_at2/116+12772279..12773486hypothetical protein
LOC_Os06g22050OsAffx.4897.1.S1_at11/116+12780812..12781501hypothetical protein
LOC_Os06g22060Os.5654.1.S1_at11/116+12793243..12799337Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os06g22070Os.52579.1.S1_at11/116+12800433..12803022Mitochondrial glycoprotein, expressed
LOC_Os06g22080Os.12534.1.S1_s_at11/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22080Os.17280.1.A1_at10/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22090Os.31911.1.S1_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22090Os.41248.4.S1_x_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5654.1.S1_at--921--1851Chr06:12798130..12798154 (25 bp)
ACGAGGACCAGCTGCCAGTCAAATT
LOC_Os06g22060
Os.5654.1.S1_at--997--2231Chr06:12798150..12798174 (25 bp)
AAATTGGGAAGCCTGCTGTTCACAT
LOC_Os06g22060
Os.5654.1.S1_at--44--9131Chr06:12798163..12798187 (25 bp)
TGCTGTTCACATGGCGAGTATCGAC
LOC_Os06g22060
Os.5654.1.S1_at--762--8811Chr06:12798435..12798459 (25 bp)
TGTTGAGACAAAACTCTTCCAGCTT
LOC_Os06g22060
Os.5654.1.S1_at--1012--2371Chr06:12798481..12798505 (25 bp)
AAACCCTGGTCCTCTGCAATTTGAG
LOC_Os06g22060
Os.5654.1.S1_at--147--2371Chr06:12798523..12798547 (25 bp)
AAAGCCGATTTCATTGTGTGTCGAA
LOC_Os06g22060
Os.5654.1.S1_at--1059--1291Chr06:12798793..12798817 (25 bp)
AGATGCTAACCATCATGTCTTCTCC
LOC_Os06g22060
Os.5654.1.S1_at--506--4391Chr06:12798829..12798853 (25 bp)
GCCAAGCAACCATCTGAGAGCCAGT
LOC_Os06g22060
Os.5654.1.S1_at--173--8991Chr06:12798859..12798883 (25 bp)
TGAAGCCTGTCATATCCTGGTATCC
LOC_Os06g22060
Os.5654.1.S1_at--943--8571Chr06:12798876..12798900 (25 bp)
TGGTATCCGTATCTCTCTGTTTTGA
LOC_Os06g22060
Os.5654.1.S1_at--336--1111Chr06:12798900..12798924 (25 bp)
AGTGTCTCGTTTTTGGACCTGTGAA
LOC_Os06g22060
Target Sequence 
ACGAGGACCAGCTGCCAGTCAAATTGGGAAGCCTGCTGTTCACATGGCGAGTATCGACTTAAAAGGAAAACCATATGAGT
TGTTGAGACAAAACTCTTCCAGCTTCTTGATGGAAGACATCTACAGAAACCCTGGTCCTCTGCAATTTGAGGGACCAGGT
GGAGAGACAAAGCCGATTTCATTGTGTGTCGAAGATCGAGACTACATGGGGAGGATCAAACAATTGCAGGAGTATTTGGA
GAAGGTCAAAAGTATTGTGAAGCCTGGATGCTCCCAGGATGTCCTGAAGGCAGCGTTAAGCGCCATGGCCTCTGTGACAG
AGATGCTAACCATCATGTCTTCTCCCTCTTTCAGTGGCCAAGCAACCATCTGAGAGCCAGTGAAGCTGAAGCCTGTCATA
TCCTGGTATCCGTATCTCTCTGTTTTGAGTGTCTCGTTTTTGGACCTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis