Browse Element(s) Details


Os.12534.1.S1_s_at

Description gb:AA753896
DB_XREF= gi:2800602
DB_XREF=97BS0342
CLONE=97BS0342
TID=Os.12534.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12534 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2208011/11mono- or diacylglycerol acyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22060Os.5654.1.S1_at11/116+12793243..12799337Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os06g22070Os.52579.1.S1_at11/116+12800433..12803022Mitochondrial glycoprotein, expressed
LOC_Os06g22080Os.12534.1.S1_s_at11/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22080Os.17280.1.A1_at10/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22090Os.31911.1.S1_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22090Os.41248.4.S1_x_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22100OsAffx.15547.1.S1_at11/116+12824827..12826244expressed protein
LOC_Os06g22110NANA6+12835897..12836437retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004144molecular_functiondiacylglycerol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12534.1.S1_s_at--539--10651Chr06:12811121..12811145 (25 bp)
TTCCAGCACTAAACTCAGGTTAGGC
LOC_Os06g22080
Os.12534.1.S1_s_at--833--4951Chr06:12811126..12811150 (25 bp)
GCACTAAACTCAGGTTAGGCTTCAG
LOC_Os06g22080
Os.12534.1.S1_s_at--484--3711Chr06:12811129..12811153 (25 bp)
CTAAACTCAGGTTAGGCTTCAGGAA
LOC_Os06g22080
Os.12534.1.S1_s_at--735--1171Chr06:12811189..12811213 (25 bp)
AGTAGCACTTCGCACTCAGGTCGCA
LOC_Os06g22080
Os.12534.1.S1_s_at--878--2051Chr06:12811195..12811219 (25 bp)
ACTTCGCACTCAGGTCGCAGTATGG
LOC_Os06g22080
Os.12534.1.S1_s_at--890--9351Chr06:12811198..12811222 (25 bp)
TCGCACTCAGGTCGCAGTATGGTCA
LOC_Os06g22080
Os.12534.1.S1_s_at--496--3451Chr06:12811236..12811260 (25 bp)
CAGTCTGTAGCTAAGGCACGTGGTT
LOC_Os06g22080
Os.12534.1.S1_s_at--490--2151Chr06:12811264..12811288 (25 bp)
ACAGCACCGCTGATGTAAAAATTGT
LOC_Os06g22080
Os.12534.1.S1_s_at--404--7051Chr06:12811278..12811302 (25 bp)
GTAAAAATTGTCACTGCAGGCCGCT
LOC_Os06g22080
Os.12534.1.S1_s_at--61--2451Chr06:12811281..12811305 (25 bp)
AAAATTGTCACTGCAGGCCGCTCAT
LOC_Os06g22080
Os.12534.1.S1_s_at--169--51Chr06:12811284..12811308 (25 bp)
ATTGTCACTGCAGGCCGCTCATAAA
LOC_Os06g22080
Target Sequence 
TTCCAGCACTAAACTCAGGTTAGGCTTCAGGAANAACATGGNTTTACTGTAGGAGTAACCAGTAATNTAGTAGCACTTCG
CACTCAGGTCGCAGTATGGTCATTTTCAGAATNTGCAGTCTGTAGCTAAGGCACGTGGTTNGNACAGCACCGCTGATGTA
AAAATTGTCACTGCAGGCCGCTCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12534.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis