Browse Element(s) Details


Os.17280.1.A1_at

Description gb:AK101908.1
DB_XREF= gi:32987117
TID=Os.17280.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071F02, full insert sequence.
FL= gb:AK101908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2208010/11mono- or diacylglycerol acyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22060Os.5654.1.S1_at11/116+12793243..12799337Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os06g22070Os.52579.1.S1_at11/116+12800433..12803022Mitochondrial glycoprotein, expressed
LOC_Os06g22080Os.12534.1.S1_s_at11/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22080Os.17280.1.A1_at10/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22090Os.31911.1.S1_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22090Os.41248.4.S1_x_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22100OsAffx.15547.1.S1_at11/116+12824827..12826244expressed protein
LOC_Os06g22110NANA6+12835897..12836437retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004144molecular_functiondiacylglycerol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17280.1.A1_at--338--5331Chr06:12810539..12810685 (25 bp)
GAAGATACGGGACACCAATCCCTTT
LOC_Os06g22080
Os.17280.1.A1_at--574--10051Chr06:12810703..12810727 (25 bp)
TAGTTGTTGGCAGACCCATTGAGGT
LOC_Os06g22080
Os.17280.1.A1_at--238--5971Chr06:12810729..12810753 (25 bp)
GAGAAAAATTCTCAGCCTACCATTG
LOC_Os06g22080
Os.17280.1.A1_at--695--5511Chr06:12811029..12811053 (25 bp)
GAACAATTTACTGTGGCCTTGCAAG
LOC_Os06g22080
Os.17280.1.A1_at--148--7551Chr06:12811041..12811065 (25 bp)
GTGGCCTTGCAAGATCTTTTCGACA
LOC_Os06g22080
Os.17280.1.A1_at--1151--1411Chr06:12811076..12811100 (25 bp)
AGAAACTGGATATCCTGGCCTCCAT
LOC_Os06g22080
Os.17280.1.A1_at--20--8431Chr06:12811092..12811116 (25 bp)
GGCCTCCATCTAAGAGTCCTATGAT
LOC_Os06g22080
Os.17280.1.A1_at--168--6111Chr06:12811105..12811129 (25 bp)
GAGTCCTATGATATAATTCCAGCAC
LOC_Os06g22080
Os.17280.1.A1_at--519--8291Chr06:12811143..12811167 (25 bp)
GGCTTCAGGAATAACATGGCTCTAC
LOC_Os06g22080
Os.17280.1.A1_at--143--10211Chr06:12811341..12811365 (25 bp)
TATTTCCTTGTTTCGAACTTTCGAT
LOC_Os06g22080
Os.17280.1.A1_at--478--2291NONE
AAATGCAGCCTATGATCTTTGTAAT
NONE
Target Sequence 
GAAGATACGGGACACCAATCCCTTTCCCAACGCCCATGNCATGTAGTTGTTGGCAGACCCATTGAGGTTGAGAAAAATTC
TCAGCCTACCATTGATGAGATAAATGAAGTCCATGAACAATTTACTGTGGCCTTGCAAGATCTTTTCGACAAATACAAGA
CAGAAACTGGATATCCTGGCCTCCATCTAAGAGTCCTATGATATAATTCCAGCACTAAACTCAGGTTAGGCTTCAGGAAT
AACATGGCTCTACTGTAGGAGTAACCAGTAATCTAGTAGCACTTCGCACTCAGGTCGCAGTATGGTCATCTTCAGAATCT
GCAGTCTGTAGCTAAGGCACGTGGTTCGTACAGCACCGCTGATGTAAAAATTGTCACTGCAGGCCGCTCATAAAGCCTTA
TAAAAGATGACCTTTCTCATAAATTTTATTTCCTTGTTTCGAACTTTCGATGAGTGAATGCATGTGTAAATATACACTGT
GAATATCAAAATGCAACTTTGGATTGGAGGATCGTGAGATGGATGTAGAACGAAAAATGCAGCCTATGATCTTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17280.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis