Browse Element(s) Details


Os.31911.1.S1_at

Description gb:AK106507.1
DB_XREF= gi:32991716
TID=Os.31911.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683B11.6 (P0683B11.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G05, full insert sequence.
FL= gb:AK106507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5181011/11pentatricopeptide, putative, expressed
LOC_Os06g220901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51770Os.39858.1.S1_at11/111+30097029..30100206Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os01g51780OsAffx.2304.1.S1_s_at11/111+30102644..30105320Auxin efflux carrier component 3, putative, expressed
LOC_Os01g51790OsAffx.23753.1.S1_at11/111+30107126..30109995pentatricopeptide, putative
LOC_Os01g51800Os.36448.1.S1_at10/111+30110395..30112802expressed protein
LOC_Os01g51810Os.31911.1.S1_at11/111+30112983..30115084pentatricopeptide, putative, expressed
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51850OsAffx.2305.2.S1_at11/111+30137820..30139315hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31911.1.S1_at--34--752Chr06:12819128..12819149 (22 bp)
ATGTTTCCCCTCAAGTGGAGCACTG
LOC_Os06g22090
Os.31911.1.S1_at--1058--8531Chr01:30113510..30113534 (25 bp)
TGGACCTCCTCTGCAAATCTGGAAG
LOC_Os01g51810
Os.31911.1.S1_at--1120--2671Chr01:30113477..30113501 (25 bp)
AAGCGTACAAGTTCATCTGCGACAT
LOC_Os01g51810
Os.31911.1.S1_at--70--1591Chr01:30113360..30113384 (25 bp)
AGCTCCTGGTTCTTGAGCCGGACAA
LOC_Os01g51810
Os.31911.1.S1_at--634--9931Chr01:30113173..30113197 (25 bp)
TACGTACCACCCGAAATCAGCTGAG
LOC_Os01g51810
Os.31911.1.S1_at--170--4731Chr01:30113154..30113178 (25 bp)
GCTGAGATTTTCAACGTCGTCGACG
LOC_Os01g51810
Os.31911.1.S1_at--66--8531Chr01:30113114..30113138 (25 bp)
TGGACGACGTTGATTCTGACCCCGA
LOC_Os01g51810
Os.31911.1.S1_at--791--5811Chr01:30113097..30113121 (25 bp)
GACCCCGATTTATTTGTTCTAGAGC
LOC_Os01g51810
Os.31911.1.S1_at--863--2451Chr01:30113045..30113069 (25 bp)
AACAATTGCAGCAGGGCATCCTTCG
LOC_Os01g51810
Os.31911.1.S1_at--263--4991Chr01:30113030..30113054 (25 bp)
GCATCCTTCGTTCACTGCAGATTGA
LOC_Os01g51810
Os.31911.1.S1_at--809--9851Chr01:30112984..30113008 (25 bp)
TACATGCATGATCCATCGATTCGAT
LOC_Os01g51810
Target Sequence 
ATGTTTCCCCTCAAGTGGAGCACTGCGCGTGCATAGTGGACCTCCTCTGCAAATCTGGAAGGCTGCGGGAAGCGTACAAG
TTCATCTGCGACATGGAGGTCGAACCAAACGCGGTGATCTGGAGCACGCTGCTGAGCGCCTGCAGGGCTCACGCCGACGT
CGAGCTGGCCAAGCTCGCCGCGAGCAAGCTCCTGGTTCTTGAGCCGGACAACTCCTCCATCTATGTCCTGCTGTCCAACA
TCTACGCGGATGCCGGCCTCTGGGGCGACGTGAGGGAGATCAGGGACCTGATGAGGAGCAAGAACGTGCAGAAGCTGTCT
GCTTATAGTTGGATAGAGCTGGACGGTGAAGTGCACAAGTTCCTGGTGCAGGATACGTACCACCCGAAATCAGCTGAGAT
TTTCAACGTCGTCGACGGCATGGGGTTGCATCTGGACGACGTTGATTCTGACCCCGATTTATTTGTTCTAGAGCACTATT
GAACATTTGAACATGCTAACAAACAATTGCAGCAGGGCATCCTTCGTTCACTGCAGATTGATTGTACTTTGCATAATTTA
TATACATGCATGATCCATCGATTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis