Browse Element(s) Details


Os.39858.1.S1_at

Description gb:CF318995
DB_XREF= gi:33690756
DB_XREF=HD--09-F12.b1
CLONE=HD--09-F12
TID=Os.39858.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative voltage-dependent anion channel protein (B1131B07.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5177011/11Outer mitochondrial membrane protein porin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51770Os.39858.1.S1_at11/111+30097029..30100206Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os01g51780OsAffx.2304.1.S1_s_at11/111+30102644..30105320Auxin efflux carrier component 3, putative, expressed
LOC_Os01g51790OsAffx.23753.1.S1_at11/111+30107126..30109995pentatricopeptide, putative
LOC_Os01g51800Os.36448.1.S1_at10/111+30110395..30112802expressed protein
LOC_Os01g51810Os.31911.1.S1_at11/111+30112983..30115084pentatricopeptide, putative, expressed
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39858.1.S1_at--766--971Chr01:30097509..30097533 (25 bp)
AGGAGAACACCCTCAGCTTCGGGAT
LOC_Os01g51770
Os.39858.1.S1_at--241--9011Chr01:30097455..30097479 (25 bp)
TGAAGGCGCGCTACAACAACCACGG
LOC_Os01g51770
Os.39858.1.S1_at--546--2911Chr01:30097336..30097360 (25 bp)
AAGGTTGGACTGTCGCTGGTTCTCA
LOC_Os01g51770
Os.39858.1.S1_at--1081--6571Chr01:30097281..30097305 (25 bp)
GATTCGATGATGACGATCCCTTTTT
LOC_Os01g51770
Os.39858.1.S1_at--240--5651Chr01:30097241..30097265 (25 bp)
GACAGGATGGTATCGTCCCGTATCA
LOC_Os01g51770
Os.39858.1.S1_at--682--1511Chr01:30097217..30097241 (25 bp)
AGCAGCTCCTGATGTCTAGTGAAAC
LOC_Os01g51770
Os.39858.1.S1_at--459--7891Chr01:30097185..30097209 (25 bp)
GGTTAACCTCTTTGGTGCCGTGGCA
LOC_Os01g51770
Os.39858.1.S1_at--733--3991Chr01:30097167..30097191 (25 bp)
CGTGGCATCTTTACTCTGGAAACTT
LOC_Os01g51770
Os.39858.1.S1_at--937--8151Chr01:30097150..30097174 (25 bp)
GGAAACTTGGCCTCGTAGCATCATT
LOC_Os01g51770
Os.39858.1.S1_at--536--111Chr01:30097128..30097152 (25 bp)
ATTCTGAGTATTTCCCACCTAGTAG
LOC_Os01g51770
Os.39858.1.S1_at--865--1171Chr01:30097078..30097102 (25 bp)
AGTAGTATAGTGTTTCCCCGTGGCA
LOC_Os01g51770
Target Sequence 
AGGAGAACACCCTCAGCTTCGGGATGCAGCACGCCCTGGACCCTCTCACTACCGTGAAGGCGCGCTACAACAACCACGGC
ATGGTCAGCGCCNTCATCCAGCACGAGTGGAGACCCAAGTCTTTCTTAACGCTCTCCGCCGAGGTCGACACCAAGGCGAT
CGACAAGGCCTCCAAGGTTGGACTGTCGCTGGTTCTCAAGCCCTGATGCCCCCCCTCCTGATGGCGATGATTCGATGATG
ACGATCCCTTTTTTTGGTATACTAGTAGGACAGGATGGTATCGTCCCGTATCAGCAGCTCCTGATGTCTAGTGAAACTAA
GTCTGGTTAACCTCTTTGGTGCCGTGGCATCTTTACTCTGGAAACTTGGCCTCGTAGCATCATTCTGAGTATTTCCCACC
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTATAGTGTTTCCCCGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis