Browse Element(s) Details


Os.36448.1.S1_at

Description gb:AK063369.1
DB_XREF= gi:32973387
TID=Os.36448.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131B07.26 (B1131B07.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-E01, full insert sequence.
FL= gb:AK063369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5180010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51770Os.39858.1.S1_at11/111+30097029..30100206Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os01g51780OsAffx.2304.1.S1_s_at11/111+30102644..30105320Auxin efflux carrier component 3, putative, expressed
LOC_Os01g51790OsAffx.23753.1.S1_at11/111+30107126..30109995pentatricopeptide, putative
LOC_Os01g51800Os.36448.1.S1_at10/111+30110395..30112802expressed protein
LOC_Os01g51810Os.31911.1.S1_at11/111+30112983..30115084pentatricopeptide, putative, expressed
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36448.1.S1_at--197--8491NONE
TGGCTGGTCTTCATGAGGTTCGTAA
NONE
Os.36448.1.S1_at--750--3291Chr01:30110925..30110949 (25 bp)
CAAATGTGTGTTTTTGGCTGCTGCT
LOC_Os01g51800
Os.36448.1.S1_at--670--10851Chr01:30110912..30110936 (25 bp)
TTGGCTGCTGCTTCAAATTTGTTGC
LOC_Os01g51800
Os.36448.1.S1_at--599--6951Chr01:30110874..30110898 (25 bp)
GTACCAAGCGGGTGACACGCTAAGT
LOC_Os01g51800
Os.36448.1.S1_at--469--10471Chr01:30110820..30110844 (25 bp)
TTACCCTTTATTTGCATACTCGATG
LOC_Os01g51800
Os.36448.1.S1_at--1111--6251Chr01:30110799..30110823 (25 bp)
GATGCCGGAAACTCGATAGATTTTT
LOC_Os01g51800
Os.36448.1.S1_at--470--9271Chr01:30110719..30110743 (25 bp)
TCCTGCTCGCTAATTGGTTTATCCA
LOC_Os01g51800
Os.36448.1.S1_at--560--7651Chr01:30110543..30110567 (25 bp)
GGGAGTATTCCTTATATGCTGGTAG
LOC_Os01g51800
Os.36448.1.S1_at--256--4971Chr01:30110436..30110460 (25 bp)
GCATCTGTGCATTGGCACACTTCGA
LOC_Os01g51800
Os.36448.1.S1_at--1144--2171Chr01:30110420..30110444 (25 bp)
ACACTTCGATGTGCCCATCTTGCTT
LOC_Os01g51800
Os.36448.1.S1_at--204--3631Chr01:30110402..30110426 (25 bp)
CTTGCTTCGCCCTTAATAAAGAGCT
LOC_Os01g51800
Target Sequence 
TGGCTGGTCTTCATGAGGTTCGTAATGACAAATGTGTGTTTTTGGCTGCTGCTTCAAATTTGTTGCCAATACTGGAGATG
TACCAAGCGGGTGACACGCTAAGTGAAGAACTATTACACAAAAAACACTAGTTTTACCCTTTATTTGCATACTCGATGCC
GGAAACTCGATAGATTTTTACTTGTACTTATGTTCATGAATAAAAAATAGCAAAACAATCCTTATCATATCTCTTCCTGC
TCGCTAATTGGTTTATCCATTTTTCTGGAAGGCTTCCCAGGTACTCCCTCCGTCCCATAAAAAACCAACCTAGATGTGAC
ACATCCTAGTACTACAAATCTGGACATTCTAGATTCATTATACTAGAATATGTCAAATCCAGTACTAGATTCGTTTTTTT
TTTTGGACGGAGGGAGTATTCCTTATATGCTGGTAGATTCATAGTTCATATCCTGTAGCAAACATGGAGTTTCAGTTTAC
AAAACAATGATCCTTGATATATGCTATTGATGATTTTTGCATCTGTGCATTGGCACACTTCGATGTGCCCATCTTGCTTC
GCCCTTAATAAAGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis