Browse Element(s) Details


Os.48857.1.S1_a_at

Description gb:AK062106.1
DB_XREF= gi:32972124
TID=Os.48857.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B02, full insert sequence.
FL= gb:AK098920.1 gb:AK062106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5184011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51780OsAffx.2304.1.S1_s_at11/111+30102644..30105320Auxin efflux carrier component 3, putative, expressed
LOC_Os01g51790OsAffx.23753.1.S1_at11/111+30107126..30109995pentatricopeptide, putative
LOC_Os01g51800Os.36448.1.S1_at10/111+30110395..30112802expressed protein
LOC_Os01g51810Os.31911.1.S1_at11/111+30112983..30115084pentatricopeptide, putative, expressed
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51850OsAffx.2305.2.S1_at11/111+30137820..30139315hypothetical protein
LOC_Os01g51860Os.15991.1.S1_at11/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51860OsAffx.13678.2.S1_at1/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51870OsAffx.23754.1.S1_x_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51870Os.33184.1.S1_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51880OsAffx.11567.1.S1_s_at11/111+30149180..30150624hypothetical protein
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48857.1.S1_a_at--635--10331Chr01:30129481..30129505 (25 bp)
TTTAATGATTCTACTGCTGATGCTC
LOC_Os01g51840
Os.48857.1.S1_a_at--590--1431Chr01:30129359..30129383 (25 bp)
AGAACCTCTGTCTAATGGAAACCTT
LOC_Os01g51840
Os.48857.1.S1_a_at--539--6491Chr01:30129295..30129319 (25 bp)
GATTACCCGGAAAATGGAGCCCAGA
LOC_Os01g51840
Os.48857.1.S1_a_at--569--1471Chr01:30129273..30129297 (25 bp)
AGAATACGCCAGTTCCACGAAGGAA
LOC_Os01g51840
Os.48857.1.S1_a_at--750--8571Chr01:30129183..30129207 (25 bp)
TGGATTCTGATTCACCAGCAGACAT
LOC_Os01g51840
Os.48857.1.S1_a_at--643--1411Chr01:30129164..30129188 (25 bp)
AGACATGAATGGCTTCACACGCCGC
LOC_Os01g51840
Os.48857.1.S1_a_at--1006--3751Chr01:30129139..30129159 (21 bp)
CTCTACCTTCTTCTACAAACAACAG
LOC_Os01g51840
Os.48857.1.S1_a_at--490--7751Chr01:30128208..30128232 (25 bp)
GGTGAGGACAACCAACTTCCATTTG
LOC_Os01g51840
Os.48857.1.S1_a_at--29--9011Chr01:30128161..30128185 (25 bp)
TGAAGTGCCCTGCTGTCCGTGAGAT
LOC_Os01g51840
Os.48857.1.S1_a_at--870--6051Chr01:30128141..30128165 (25 bp)
GAGATTGTCGCCATTGTTTTGTTCA
LOC_Os01g51840
Os.48857.1.S1_a_at--584--6611Chr01:30128102..30128126 (25 bp)
GTTGGCCCTGTGTTGATCTATTATC
LOC_Os01g51840
Target Sequence 
TTTAATGATTCTACTGCTGATGCTCAAGAAGTTGAAGTTCTGCCACTGCAGAACATTGATAATGAAGATAATTTCCCAGA
AAATGGTGTCTTAGGAAAGAAAGAGAAGCCAAGGTCCAAGGAAGAACCTCTGTCTAATGGAAACCTTAAAACTAGCAAGA
GGAGGTCTTCGTTCTCCACCAAATCAGATTACCCGGAAAATGGAGCCCAGAATACGCCAGTTCCACGAAGGAAGCCAAGC
TATATGGCTGCAACAGAATCTGCAAAGGCAAAGTTGCGAGGACAGAATTCACCAAGACTGGATTCTGATTCACCAGCAGA
CATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAACAGAGCGATCAGAGCTGAATGGAGACGGTGGT
GAGGACAACCAACTTCCATTTGAACGGTGCAACGTTGTGGTGGATGAAGTGCCCTGCTGTCCGTGAGATTGTCGCCATTG
TTTTGTTCAAGATGTAAAAATATGTTGGCCCTGTGTTGATCTATTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48857.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis