Browse Element(s) Details


OsAffx.2305.2.S1_at

Description tigr:9629.m05027
TID=OsAffx.2305.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5185011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51810Os.31911.1.S1_at11/111+30112983..30115084pentatricopeptide, putative, expressed
LOC_Os01g51820Os.45161.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.22699.1.S1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_x_at2/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.16451.1.A1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51820OsAffx.8279.1.S1_at1/111+30116814..30123692retrotransposon protein, putative, unclassified
LOC_Os01g51830NANA1+30124394..30127416hypothetical protein
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51850OsAffx.2305.2.S1_at11/111+30137820..30139315hypothetical protein
LOC_Os01g51860Os.15991.1.S1_at11/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51860OsAffx.13678.2.S1_at1/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51870OsAffx.23754.1.S1_x_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51870Os.33184.1.S1_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51880OsAffx.11567.1.S1_s_at11/111+30149180..30150624hypothetical protein
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2305.2.S1_at--219--1851Chr01:30138234..30138258 (25 bp)
ACTGAATTACCTGAAAAGAGGCCTA
LOC_Os01g51850
OsAffx.2305.2.S1_at--209--2771Chr01:30138219..30138243 (25 bp)
AAGAGGCCTAAAGTCACTTCCTTGA
LOC_Os01g51850
OsAffx.2305.2.S1_at--838--9791Chr01:30138211..30138235 (25 bp)
TAAAGTCACTTCCTTGAAGAGGGCC
LOC_Os01g51850
OsAffx.2305.2.S1_at--947--5551Chr01:30138161..30138185 (25 bp)
GAAAGAGGCCCAAGACACCAGTCAC
LOC_Os01g51850
OsAffx.2305.2.S1_at--741--1151Chr01:30138142..30138166 (25 bp)
AGTCACTTCCACTTTACCCAAGAGG
LOC_Os01g51850
OsAffx.2305.2.S1_at--455--1191Chr01:30138132..30138156 (25 bp)
ACTTTACCCAAGAGGCAACCGATCG
LOC_Os01g51850
OsAffx.2305.2.S1_at--37--1311Chr01:30138126..30138146 (21 bp)
AGAGGCAACCGATCGAAGAAGCACA
LOC_Os01g51850
OsAffx.2305.2.S1_at--501--10231Chr01:30137962..30137986 (25 bp)
TTTGGATACAAGTTTCTCTGAAGGG
LOC_Os01g51850
OsAffx.2305.2.S1_at--923--2751Chr01:30137924..30137948 (25 bp)
AAGACTCTGAGCGACATTGCAGTGA
LOC_Os01g51850
OsAffx.2305.2.S1_at--455--9051Chr01:30137907..30137931 (25 bp)
TGCAGTGAACTGGAATGCTCCATTA
LOC_Os01g51850
OsAffx.2305.2.S1_at--710--1951Chr01:30137899..30137923 (25 bp)
ACTGGAATGCTCCATTACTGATGTT
LOC_Os01g51850
Target Sequence 
ACTGAATTACCTGAAAAGAGGCCTAAAGTCACTTCCTTGAAGAGGGCCCCCAAAGCCCAATTGGGATTAGGTGGAAAGAG
GCCCAAGACACCAGTCACTTCCACTTTACCCAAGAGGCAACCGATCGAAGAAGCACAAAGATCAAAATGGAGCAATTATT
TGGATACAAGTTTCTCTGAAGGGGGAAGTGGGTTTGAAGACTCTGAGCGACATTGCAGTGAACTGGAATGCTCCATTACT
GATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2305.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis