Browse Element(s) Details


Os.11023.1.S2_a_at

Description gb:AK101741.1
DB_XREF= gi:32986950
TID=Os.11023.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683B11.14 (P0683B11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061M04, full insert sequence.
FL= gb:AK101741.1 gb:AK101771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5189011/11inositol polyphosphate 5-phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51840Os.48857.1.S1_a_at11/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.53729.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51840Os.7994.1.S1_at1/111+30127941..30133718IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51850OsAffx.2305.2.S1_at11/111+30137820..30139315hypothetical protein
LOC_Os01g51860Os.15991.1.S1_at11/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51860OsAffx.13678.2.S1_at1/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51870OsAffx.23754.1.S1_x_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51870Os.33184.1.S1_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51880OsAffx.11567.1.S1_s_at11/111+30149180..30150624hypothetical protein
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51904Os.50521.1.S1_at2/111+30166253..30168706hypothetical protein
LOC_Os01g51920Os.13835.2.S2_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S3_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S1_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51930OsAffx.23756.1.S1_at10/111+30179099..30179906hypothetical protein
LOC_Os01g51930OsAffx.21539.1.S1_x_at2/111+30179099..30179906hypothetical protein
LOC_Os01g51940OsAffx.11568.2.S1_at11/111+30181508..30182541hypothetical protein
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11023.1.S2_a_at--56--8691Chr01:30162490..30162514 (25 bp)
TGTGACAGCTGTGTACACTTCCGAT
LOC_Os01g51890
Os.11023.1.S2_a_at--1046--1591Chr01:30162496..30162520 (25 bp)
AGCTGTGTACACTTCCGATGTTGAG
LOC_Os01g51890
Os.11023.1.S2_a_at--849--7431Chr01:30162500..30162524 (25 bp)
GTGTACACTTCCGATGTTGAGGTTT
LOC_Os01g51890
Os.11023.1.S2_a_at--59--2051Chr01:30162506..30162530 (25 bp)
ACTTCCGATGTTGAGGTTTTCTGTC
LOC_Os01g51890
Os.11023.1.S2_a_at--436--6271Chr01:30162512..30162536 (25 bp)
GATGTTGAGGTTTTCTGTCCCAAAA
LOC_Os01g51890
Os.11023.1.S2_a_at--1112--7851Chr01:30162520..30162544 (25 bp)
GGTTTTCTGTCCCAAAAAGTTGCAG
LOC_Os01g51890
Os.11023.1.S2_a_at--5--7251Chr01:30162528..30162552 (25 bp)
GTCCCAAAAAGTTGCAGAGAGCTCT
LOC_Os01g51890
Os.11023.1.S2_a_at--1096--9031Chr01:30162540..30162564 (25 bp)
TGCAGAGAGCTCTTACCTTCACCGA
LOC_Os01g51890
Os.11023.1.S2_a_at--459--5911Chr01:30162546..30162570 (25 bp)
GAGCTCTTACCTTCACCGATGCAGA
LOC_Os01g51890
Os.11023.1.S2_a_at--38--5051Chr01:30162566..30162590 (25 bp)
GCAGAGGTTGAGGACCAATTCTCAT
LOC_Os01g51890
Os.11023.1.S2_a_at--1108--5851Chr01:30162575..30162599 (25 bp)
GAGGACCAATTCTCATTTGAGGAAG
LOC_Os01g51890
Target Sequence 
TGTGACAGCTGTGTACACTTCCGATGTTGAGGTTTTCTGTCCCAAAAAGTTGCAGAGAGCTCTTACCTTCACCGATGCAG
AGGTTGAGGACCAATTCTCATTTGAGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11023.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis