Browse Element(s) Details


Os.13835.2.S2_at

Description gb:AK070065.1
DB_XREF= gi:32980089
TID=Os.13835.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative choline kinase (P0683B11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041L12, full insert sequence.
FL= gb:AK105151.1 gb:AK070065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5192011/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51860Os.15991.1.S1_at11/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51860OsAffx.13678.2.S1_at1/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51870OsAffx.23754.1.S1_x_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51870Os.33184.1.S1_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51880OsAffx.11567.1.S1_s_at11/111+30149180..30150624hypothetical protein
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51904Os.50521.1.S1_at2/111+30166253..30168706hypothetical protein
LOC_Os01g51920Os.13835.2.S2_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S3_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S1_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51930OsAffx.23756.1.S1_at10/111+30179099..30179906hypothetical protein
LOC_Os01g51930OsAffx.21539.1.S1_x_at2/111+30179099..30179906hypothetical protein
LOC_Os01g51940OsAffx.11568.2.S1_at11/111+30181508..30182541hypothetical protein
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13835.2.S2_at--1020--2891Chr01:30172564..30172588 (25 bp)
AAGGTTCTGCCGTGGGAATCTGCAA
LOC_Os01g51920
Os.13835.2.S2_at--669--5251Chr01:30172549..30172573 (25 bp)
GAATCTGCAATTCCTTAGACCTTTC
LOC_Os01g51920
Os.13835.2.S2_at--129--5851Chr01:30172532..30172556 (25 bp)
GACCTTTCTTATCTATCAGTTCATA
LOC_Os01g51920
Os.13835.2.S2_at--426--351Chr01:30172510..30172534 (25 bp)
ATAAAATCTCTCTTCATGCCCTAGT
LOC_Os01g51920
Os.13835.2.S2_at--1042--591Chr01:30172495..30172519 (25 bp)
ATGCCCTAGTCAAATATCTCTCCTA
LOC_Os01g51920
Os.13835.2.S2_at--991--3471Chr01:30172465..30172489 (25 bp)
CAGGAATTGTTTATGCCCACACCAA
LOC_Os01g51920
Os.13835.2.S2_at--774--7531Chr01:30172415..30172439 (25 bp)
GTGGCATGAGGCGTACAATCTTATT
LOC_Os01g51920
Os.13835.2.S2_at--487--10451Chr01:30172363..30172387 (25 bp)
TTAGTTTTCTTTGCACTCTTTCCTG
LOC_Os01g51920
Os.13835.2.S2_at--392--5111Chr01:30172351..30172375 (25 bp)
GCACTCTTTCCTGTATTGTCAGTAA
LOC_Os01g51920
Os.13835.2.S2_at--913--331Chr01:30172098..30172122 (25 bp)
ATACATGGTCTATTTCTCTTGCGGA
LOC_Os01g51920
Os.13835.2.S2_at--907--6091Chr01:30172031..30172055 (25 bp)
GAGTCGAAGCACTTTCTGGATTCTT
LOC_Os01g51920
Target Sequence 
AAGGTTCTGCCGTGGGAATCTGCAATTCCTTAGACCTTTCTTATCTATCAGTTCATAAAATCTCTCTTCATGCCCTAGTC
AAATATCTCTCCTACTTAACAGGAATTGTTTATGCCCACACCAATTATCTCCCAAAATTATTTGCCTCTGTGGCATGAGG
CGTACAATCTTATTTTTAAGGGTATTGTCAACAGCTGGAATTTAGTTTTCTTTGCACTCTTTCCTGTATTGTCAGTAAAA
TTGTGATACAAAGTCAATAGTCGGTGAAGCTATTAATAACTCGTTTGAAAGATTTTTTTTTNNCTTTCGTTTGAATTAGT
CAGCTAGAATTGATAATTGTCCATTCGACAACAGGAGATGTCTCTTTCAGAGAAGCTGTTGATTGAAAACAATTTATTGG
ACTTGAGAAAAGCAAGATAGCTGACTAAACTGGTGTAAAGTAAGGACTGAATGGAGTAAATCTAGACCATACATGGTCTA
TTTCTCTTGCGGAATCTCTTTTAGAAAGTGAATTAGGCTATAGCTGTTAAATTGCGAGTCGAAGCACTTTCTGGATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13835.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis