Browse Element(s) Details


Os.53729.1.S1_at

Description gb:AK099583.1
DB_XREF= gi:32984792
TID=Os.53729.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042A20, full insert sequence.
FL= gb:AK099583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4293011/11NB-ARC domain containing protein, expressed
LOC_Os01g518401/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42870Os.50389.1.S1_at11/118+26970473..26976632expressed protein
LOC_Os08g42880NANA8+26982758..26983288hypothetical protein
LOC_Os08g42890OsAffx.6116.1.S1_at11/118+26985960..26986502pectinesterase inhibitor domain containing protein
LOC_Os08g42900OsAffx.6117.1.S1_at11/118+26987795..26988501NA
LOC_Os08g42910NANA8+26990641..26994443Methionine aminopeptidase 2, putative, expressed
LOC_Os08g42920Os.9188.1.S1_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42920Os.9188.1.S1_x_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42930Os.53729.1.S1_at11/118+26997252..27000882NB-ARC domain containing protein, expressed
LOC_Os08g42940OsAffx.17484.1.S1_x_at11/118+27001660..27003648expressed protein
LOC_Os08g42950Os.25017.1.S1_at11/118+27009417..27012121haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g42960Os.49213.1.S1_at11/118+27023626..27027664Ankyrin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53729.1.S1_at--96--1651Chr08:27000292..27000316 (25 bp)
AGCGAACATGATGGTGCCTCTGGAA
LOC_Os08g42930
Os.53729.1.S1_at--386--711Chr08:27000299..27000323 (25 bp)
ATGATGGTGCCTCTGGAAGACAAGA
LOC_Os08g42930
Os.53729.1.S1_at--690--5371Chr08:27000314..27000338 (25 bp)
GAAGACAAGAAAAGCCGTAGACCCT
LOC_Os08g42930
Os.53729.1.S1_at--98--5991Chr08:27000330..27000354 (25 bp)
GTAGACCCTTCGAAGCCCTACGGAG
LOC_Os08g42930
Os.53729.1.S1_at--371--3731Chr08:27000347..27000371 (25 bp)
CTACGGAGCTTGACTCTGCGTGGTT
LOC_Os08g42930
Os.53729.1.S1_at--1116--5911Chr08:27000352..27000376 (25 bp)
GAGCTTGACTCTGCGTGGTTCTAAC
LOC_Os08g42930
Os.53729.1.S1_at--1081--4651Chr08:27000364..27000388 (25 bp)
GCGTGGTTCTAACTGCTTCTTAGCA
LOC_Os08g42930
Os.53729.1.S1_at--858--9071Chr08:27000377..27000401 (25 bp)
TGCTTCTTAGCAACGTGCAGTTTGT
LOC_Os08g42930
Os.53729.1.S1_at--784--10011Chr08:27000384..27000408 (25 bp)
TAGCAACGTGCAGTTTGTTTTTTGC
LOC_Os08g42930
Os.53729.1.S1_at--669--5613Chr08:27000412..27000436 (25 bp)
GACGGCCAAAGGTAGGCCGGCCAAT
LOC_Os08g42930
Os.53729.1.S1_at--835--4812Chr08:27000539..27000563 (25 bp)
GCAAGTCCCGCCTCTAATCGGGATT
LOC_Os08g42930
Target Sequence 
AGCGAACATGATGGTGCCTCTGGAAGACAAGAAAAGCCGTAGACCCTTCGAAGCCCTACGGAGCTTGACTCTGCGTGGTT
CTAACTGCTTCTTAGCAACGTGCAGTTTGTTTTTTGCCGGGACGGCCAAAGGTAGGCCGGCCAATTTCATTAAGATTGGG
GGAAATAAAGTTTTAATTACAANGACATGAAGGATGTCGCGCCGGTCTCAGGCAAACTCAAGCCCGGAAAGAAAAAGAAA
AAATGGGGCAAGTCCCGCCTCTAATCGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis