Browse Element(s) Details


OsAffx.6117.1.S1_at

Description tigr:9636.m04365
TID=OsAffx.6117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4290011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42860OsAffx.20354.1.S1_at2/118+26965938..26968659retrotransposon protein, putative, unclassified
LOC_Os08g42870Os.50389.1.S1_at11/118+26970473..26976632expressed protein
LOC_Os08g42880NANA8+26982758..26983288hypothetical protein
LOC_Os08g42890OsAffx.6116.1.S1_at11/118+26985960..26986502pectinesterase inhibitor domain containing protein
LOC_Os08g42900OsAffx.6117.1.S1_at11/118+26987795..26988501NA
LOC_Os08g42910NANA8+26990641..26994443Methionine aminopeptidase 2, putative, expressed
LOC_Os08g42920Os.9188.1.S1_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42920Os.9188.1.S1_x_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42930Os.53729.1.S1_at11/118+26997252..27000882NB-ARC domain containing protein, expressed
LOC_Os08g42940OsAffx.17484.1.S1_x_at11/118+27001660..27003648expressed protein
LOC_Os08g42950Os.25017.1.S1_at11/118+27009417..27012121haloacid dehalogenase-like hydrolase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6117.1.S1_at--41--8231Chr08:26988443..26988467 (25 bp)
GGCAACATCTTAATGAAGTATCCAA
LOC_Os08g42900
OsAffx.6117.1.S1_at--231--431Chr08:26988431..26988455 (25 bp)
ATGAAGTATCCAAGGTCTTTGGTGC
LOC_Os08g42900
OsAffx.6117.1.S1_at--502--9551Chr08:26988416..26988440 (25 bp)
TCTTTGGTGCTGAGAATGCAAACAA
LOC_Os08g42900
OsAffx.6117.1.S1_at--284--10851Chr08:26988413..26988437 (25 bp)
TTGGTGCTGAGAATGCAAACAAGTT
LOC_Os08g42900
OsAffx.6117.1.S1_at--911--2451Chr08:26988396..26988420 (25 bp)
AACAAGTTGAAGCAATTTCTCCCAC
LOC_Os08g42900
OsAffx.6117.1.S1_at--840--2811Chr08:26988393..26988417 (25 bp)
AAGTTGAAGCAATTTCTCCCACCAG
LOC_Os08g42900
OsAffx.6117.1.S1_at--896--1231Chr08:26988392..26988416 (25 bp)
AGTTGAAGCAATTTCTCCCACCAGG
LOC_Os08g42900
OsAffx.6117.1.S1_at--272--10751Chr08:26988390..26988414 (25 bp)
TTGAAGCAATTTCTCCCACCAGGTT
LOC_Os08g42900
OsAffx.6117.1.S1_at--966--5371Chr08:26988388..26988412 (25 bp)
GAAGCAATTTCTCCCACCAGGTTCA
LOC_Os08g42900
OsAffx.6117.1.S1_at--757--3111Chr08:26988383..26988407 (25 bp)
AATTTCTCCCACCAGGTTCACAGAA
LOC_Os08g42900
OsAffx.6117.1.S1_at--425--191Chr08:26988382..26988406 (25 bp)
ATTTCTCCCACCAGGTTCACAGAAA
LOC_Os08g42900
Target Sequence 
GGCAACATCTTAATGAAGTATCCAAGGTCTTTGGTGCTGAGAATGCAAACAAGTTGAAGCAATTTCTCCCACCAGGTTCA
CAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis