Browse Element(s) Details


Os.25017.1.S1_at

Description gb:AK058496.1
DB_XREF= gi:32968514
TID=Os.25017.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E11, full insert sequence.
FL= gb:AK058496.1 gb:AK121886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4295011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42890OsAffx.6116.1.S1_at11/118+26985960..26986502pectinesterase inhibitor domain containing protein
LOC_Os08g42900OsAffx.6117.1.S1_at11/118+26987795..26988501NA
LOC_Os08g42910NANA8+26990641..26994443Methionine aminopeptidase 2, putative, expressed
LOC_Os08g42920Os.9188.1.S1_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42920Os.9188.1.S1_x_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42930Os.53729.1.S1_at11/118+26997252..27000882NB-ARC domain containing protein, expressed
LOC_Os08g42940OsAffx.17484.1.S1_x_at11/118+27001660..27003648expressed protein
LOC_Os08g42950Os.25017.1.S1_at11/118+27009417..27012121haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g42960Os.49213.1.S1_at11/118+27023626..27027664Ankyrin-1, putative, expressed
LOC_Os08g42980Os.27706.1.S1_at8/118+27030760..27036184La domain containing protein, expressed
LOC_Os08g42990OsAffx.6118.1.S1_at11/118+27036436..27038464expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25017.1.S1_at--651--7231Chr08:27011543..27011567 (25 bp)
GTCGCTTCTGCATTCATTACTGGAG
LOC_Os08g42950
Os.25017.1.S1_at--263--10471Chr08:27011559..27011583 (25 bp)
TTACTGGAGGGATTCATGCAACTGA
LOC_Os08g42950
Os.25017.1.S1_at--597--8051Chr08:27011615..27011639 (25 bp)
GGAGAGGACGCCATCGATTCATTGT
LOC_Os08g42950
Os.25017.1.S1_at--111--51Chr08:27011635..27011659 (25 bp)
ATTGTGCCGCAAGCATGGCTCCTAT
LOC_Os08g42950
Os.25017.1.S1_at--825--4351Chr08:27011661..27011685 (25 bp)
CCACCTATGTTTTGCCTTCATTTAC
LOC_Os08g42950
Os.25017.1.S1_at--58--7771Chr08:27011741..27011765 (25 bp)
GGTGCAGAAACCGTCAATTCCAGCA
LOC_Os08g42950
Os.25017.1.S1_at--611--3171Chr08:27011787..27011811 (25 bp)
AATTGTGCTCTTGAGGTACCTGCTA
LOC_Os08g42950
Os.25017.1.S1_at--25--6991Chr08:27011802..27011826 (25 bp)
GTACCTGCTACTGTGCTCAACGTTT
LOC_Os08g42950
Os.25017.1.S1_at--583--9691Chr08:27011818..27011842 (25 bp)
TCAACGTTTCCCATTTTCCTGAGTT
LOC_Os08g42950
Os.25017.1.S1_at--686--5231Chr08:27011885..27011909 (25 bp)
GAATAGTCTTATTTCCTTGCTGGAT
LOC_Os08g42950
Os.25017.1.S1_at--172--10811Chr08:27011949..27011973 (25 bp)
TTGTTTTGCAATGGTTCCTTCTCTG
LOC_Os08g42950
Target Sequence 
GTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGA
CGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACNCGGTA
TACCTTNGGGTAAATGCATCATCTGNGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAAT
CAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTG
AGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTT
TATGATTTGTTTTGCAATGGTTCCTTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis