Browse Element(s) Details


Os.49213.1.S1_at

Description gb:AK100665.1
DB_XREF= gi:32985874
TID=Os.49213.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112E24, full insert sequence.
FL= gb:AK100665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4296011/11Ankyrin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42930Os.53729.1.S1_at11/118+26997252..27000882NB-ARC domain containing protein, expressed
LOC_Os08g42940OsAffx.17484.1.S1_x_at11/118+27001660..27003648expressed protein
LOC_Os08g42950Os.25017.1.S1_at11/118+27009417..27012121haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g42960Os.49213.1.S1_at11/118+27023626..27027664Ankyrin-1, putative, expressed
LOC_Os08g42980Os.27706.1.S1_at8/118+27030760..27036184La domain containing protein, expressed
LOC_Os08g42990OsAffx.6118.1.S1_at11/118+27036436..27038464expressed protein
LOC_Os08g43000OsAffx.6119.1.S1_at11/118+27042788..27046420NB-ARC domain containing protein, expressed
LOC_Os08g43010OsAffx.17486.1.S1_at11/118+27048850..27052404NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49213.1.S1_at--666--3611Chr08:27027065..27027089 (25 bp)
CTTGGTTCCATGTGCTACTGTATCA
LOC_Os08g42960
Os.49213.1.S1_at--27--5291Chr08:27027121..27027145 (25 bp)
GAAGGCGTCTACAAGCCAATCTCGC
LOC_Os08g42960
Os.49213.1.S1_at--956--3051Chr08:27027138..27027162 (25 bp)
AATCTCGCTCATGGTCTCAAACAGT
LOC_Os08g42960
Os.49213.1.S1_at--355--2491Chr08:27027157..27027181 (25 bp)
AACAGTTGACTCAGATCCAGATCTA
LOC_Os08g42960
Os.49213.1.S1_at--604--8511Chr08:27027237..27027261 (25 bp)
TGGAATCCATGTACACGAGAGTGCT
LOC_Os08g42960
Os.49213.1.S1_at--1041--2831Chr08:27027306..27027330 (25 bp)
AAGTCTTTGTTCAGAGCAAGGTGCC
LOC_Os08g42960
Os.49213.1.S1_at--268--4291Chr08:27027413..27027437 (25 bp)
CCTCACACTGGCTGCTGAATTTGTT
LOC_Os08g42960
Os.49213.1.S1_at--795--10791Chr08:27027433..27027457 (25 bp)
TTGTTCCTGGTGTTTACCTGGAGCT
LOC_Os08g42960
Os.49213.1.S1_at--1113--3871Chr08:27027456..27027480 (25 bp)
CTGTGGTCTCGTGTCAGCGAATGAA
LOC_Os08g42960
Os.49213.1.S1_at--283--2031Chr08:27027571..27027595 (25 bp)
ACTATGCTCTGTCACATACCTTGGA
LOC_Os08g42960
Os.49213.1.S1_at--1134--751Chr08:27027597..27027621 (25 bp)
ATGTCTGCTGCATGTTGTTGCTCGA
LOC_Os08g42960
Target Sequence 
CTTGGTTCCATGTGCTACTGTATCATTGCTCATAGGATGGATGAGAGGAAGATCAGGAAGGCGTCTACAAGCCAATCTCG
CTCATGGTCTCAAACAGTTGACTCAGATCCAGATCTACTCAACAGTGAATATAAGAAAATGTATGCACTATAGGATAATA
GTTACATGATGATGGAATCCATGTACACGAGAGTGCTGTTTTTTTTTACCCGAGGCAACAAGAAGAATGGAATTGACATG
GAAGTCTTTGTTCAGAGCAAGGTGCCAGCTATATTAACTGAAGGCACCTTACTGCAATGCAAAGCAAGTTAACTGAACTG
CCAAAACAAAGGAAGTTAACTGAAGAAACCTCACACTGGCTGCTGAATTTGTTCCTGGTGTTTACCTGGAGCTGTGGTCT
CGTGTCAGCGAATGAACACCTGCTAAAATTGTTTTGTTGTTGCTAAAAAAAGGTCAATAGTGAGGGCAACAATACGATTT
GTAGACTGTACTAGGAAAAGAAAAATACTATGCTCTGTCACATACCTTGGACATGTCTGCTGCATGTTGTTGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis