Browse Element(s) Details


OsAffx.17486.1.S1_at

Description tigr:9636.m04377
TID=OsAffx.17486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4301011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42960Os.49213.1.S1_at11/118+27023626..27027664Ankyrin-1, putative, expressed
LOC_Os08g42980Os.27706.1.S1_at8/118+27030760..27036184La domain containing protein, expressed
LOC_Os08g42990OsAffx.6118.1.S1_at11/118+27036436..27038464expressed protein
LOC_Os08g43000OsAffx.6119.1.S1_at11/118+27042788..27046420NB-ARC domain containing protein, expressed
LOC_Os08g43010OsAffx.17486.1.S1_at11/118+27048850..27052404NB-ARC domain containing protein, expressed
LOC_Os08g43020NANA8+27063639..27064597Transferase family protein
LOC_Os08g43030Os.2741.4.S1_x_at2/118+27066547..27067545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g43040Os.15257.1.S1_at11/118+27069428..27072050Transferase family protein, expressed
LOC_Os08g43050Os.49522.1.S1_at10/118+27073030..27077088NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17486.1.S1_at--1101--7031Chr08:27049426..27049450 (25 bp)
GTCAAACTGGCCCTTTGGTTTCTGG
LOC_Os08g43010
OsAffx.17486.1.S1_at--60--8591Chr08:27049411..27049435 (25 bp)
TGGTTTCTGGGATTGCTTTGCATTT
LOC_Os08g43010
OsAffx.17486.1.S1_at--45--4051Chr08:27049357..27049381 (25 bp)
CGATCTTGTCCATTGGCCTGTGAAG
LOC_Os08g43010
OsAffx.17486.1.S1_at--869--4911Chr08:27049322..27049346 (25 bp)
GCTTGAATTCCCTTCGTTGTGTAAG
LOC_Os08g43010
OsAffx.17486.1.S1_at--41--1451Chr08:27049261..27049285 (25 bp)
AGAAGAATCCTTATTCCCGTCTGGT
LOC_Os08g43010
OsAffx.17486.1.S1_at--146--4911Chr08:27049179..27049203 (25 bp)
GCTTCACTGGAGACACTACGCATTA
LOC_Os08g43010
OsAffx.17486.1.S1_at--866--451Chr08:27049094..27049118 (25 bp)
ATCTCACATTATTTTCTTGCTCAAG
LOC_Os08g43010
OsAffx.17486.1.S1_at--629--4471Chr08:27049057..27049081 (25 bp)
GCCTGATGTTATGGATGGCCTCACT
LOC_Os08g43010
OsAffx.17486.1.S1_at--656--8451Chr08:27049042..27049066 (25 bp)
TGGCCTCACTGGTCTTCAGGAACTA
LOC_Os08g43010
OsAffx.17486.1.S1_at--1090--5471Chr08:27049023..27049047 (25 bp)
GAACTATGTGTTCGGCAGTGCCCTG
LOC_Os08g43010
OsAffx.17486.1.S1_at--136--4611Chr08:27048967..27048991 (25 bp)
GCGACTGCCAAACCTCAGGAAGCTA
LOC_Os08g43010
Target Sequence 
GTCAAACTGGCCCTTTGGTTTCTGGGATTGCTTTGCATTTGTGGAAGAATTGTCGATAGTATTATGCGACGATCTTGTCC
ATTGGCCTGTGAAGGAGCTCTGTGGCTTGAATTCCCTTCGTTGTGTAAGATTTAGTTATTGCAAGAATCTGACCAGTTCA
TCATCAGAAGAATCCTTATTCCCGTCTGGTCTGGAAAAGTTGTACATAGAATTTTGCAATAACTTATTAGAGATTCCCAA
GCTCCCTGCTTCACTGGAGACACTACGCATTAATGAATGCACTTCTTTGGTGTCTCTGCCACCAAATCTTGCAAGACTTG
CCAAGTTGAGAGATCTCACATTATTTTCTTGCTCAAGTCTGAGAAATTTGCCTGATGTTATGGATGGCCTCACTGGTCTT
CAGGAACTATGTGTTCGGCAGTGCCCTGGGGTAGAGACACTGCCACAGAGTCTTCTTCAGCGACTGCCAAACCTCAGGAA
GCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis