Browse Element(s) Details


Os.9188.1.S1_at

Description gb:AK058490.1
DB_XREF= gi:32968508
TID=Os.9188.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E01, full insert sequence.
FL= gb:AK058490.1 gb:AK101416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4292011/1160S ribosomal protein L7 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42870Os.50389.1.S1_at11/118+26970473..26976632expressed protein
LOC_Os08g42880NANA8+26982758..26983288hypothetical protein
LOC_Os08g42890OsAffx.6116.1.S1_at11/118+26985960..26986502pectinesterase inhibitor domain containing protein
LOC_Os08g42900OsAffx.6117.1.S1_at11/118+26987795..26988501NA
LOC_Os08g42910NANA8+26990641..26994443Methionine aminopeptidase 2, putative, expressed
LOC_Os08g42920Os.9188.1.S1_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42920Os.9188.1.S1_x_at11/118+26994919..2699664760S ribosomal protein L7 containing protein, expressed
LOC_Os08g42930Os.53729.1.S1_at11/118+26997252..27000882NB-ARC domain containing protein, expressed
LOC_Os08g42940OsAffx.17484.1.S1_x_at11/118+27001660..27003648expressed protein
LOC_Os08g42950Os.25017.1.S1_at11/118+27009417..27012121haloacid dehalogenase-like hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9188.1.S1_at--719--8611Chr08:26996434..26996458 (25 bp)
TGGTGACTCAGGGAACCGCGAAGAT
LOC_Os08g42920
Os.9188.1.S1_at--900--7351Chr08:26996436..26996460 (25 bp)
GTGACTCAGGGAACCGCGAAGATAA
LOC_Os08g42920
Os.9188.1.S1_at--73--9651Chr08:26996441..26996465 (25 bp)
TCAGGGAACCGCGAAGATAAAATCA
LOC_Os08g42920
Os.9188.1.S1_at--814--8171Chr08:26996445..26996469 (25 bp)
GGAACCGCGAAGATAAAATCAATGA
LOC_Os08g42920
Os.9188.1.S1_at--247--7651Chr08:26996527..26996551 (25 bp)
GGGATGGATCCGTTATACCTTGTCA
LOC_Os08g42920
Os.9188.1.S1_at--1002--6231Chr08:26996529..26996553 (25 bp)
GATGGATCCGTTATACCTTGTCAGT
LOC_Os08g42920
Os.9188.1.S1_at--252--8571Chr08:26996531..26996555 (25 bp)
TGGATCCGTTATACCTTGTCAGTTT
LOC_Os08g42920
Os.9188.1.S1_at--751--6371Chr08:26996533..26996557 (25 bp)
GATCCGTTATACCTTGTCAGTTTTG
LOC_Os08g42920
Os.9188.1.S1_at--1143--511Chr08:26996534..26996558 (25 bp)
ATCCGTTATACCTTGTCAGTTTTGT
LOC_Os08g42920
Os.9188.1.S1_at--116--4031Chr08:26996537..26996561 (25 bp)
CGTTATACCTTGTCAGTTTTGTAAT
LOC_Os08g42920
Os.9188.1.S1_at--316--10191Chr08:26996540..26996564 (25 bp)
TATACCTTGTCAGTTTTGTAATAGC
LOC_Os08g42920
Target Sequence 
TGGTGACTCAGGGAACCGCGAAGATAAAATCAATGAATTAATTGAGAAGTTGAATTAGTGCAGAACCTATGCCCAGTCGT
AATTCATGTGCAAGGGATGGATCCGTTATACCTTGTCAGTTTTGTAATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis