Browse Element(s) Details


OsAffx.15547.1.S1_at

Description tigr:9634.m02166
TID=OsAffx.15547.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dna-binding protein escarola. (mouse-ear cress), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2210011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22070Os.52579.1.S1_at11/116+12800433..12803022Mitochondrial glycoprotein, expressed
LOC_Os06g22080Os.12534.1.S1_s_at11/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22080Os.17280.1.A1_at10/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22090Os.31911.1.S1_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22090Os.41248.4.S1_x_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22100OsAffx.15547.1.S1_at11/116+12824827..12826244expressed protein
LOC_Os06g22110NANA6+12835897..12836437retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22120OsAffx.27764.1.S1_at11/116+12838382..12840368hypothetical protein
LOC_Os06g22120OsAffx.14951.1.S1_at1/116+12838382..12840368hypothetical protein
LOC_Os06g22130NANA6+12840886..12841606retrotransposon protein, putative, unclassified
LOC_Os06g22140Os.9453.1.S1_at11/116+12847659..12851831Thioredoxin reductase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15547.1.S1_at--165--7211Chr06:12825196..12825220 (25 bp)
GTCGAGTGCGTCTGCGAGTTCGCGC
LOC_Os06g22100
OsAffx.15547.1.S1_at--556--1731Chr06:12825322..12825346 (25 bp)
ACCATGCGCGGCCAGTTCGAGATCC
LOC_Os06g22100
OsAffx.15547.1.S1_at--762--9151Chr06:12825326..12825350 (25 bp)
TGCGCGGCCAGTTCGAGATCCTGTC
LOC_Os06g22100
OsAffx.15547.1.S1_at--989--3191Chr06:12825504..12825528 (25 bp)
CAATGCCGTCTACGAGCGTCTGCCA
LOC_Os06g22100
OsAffx.15547.1.S1_at--49--2171Chr06:12825625..12825649 (25 bp)
ACAGCCTCGCAGTCCTCTGAGGTGA
LOC_Os06g22100
OsAffx.15547.1.S1_at--756--1131Chr06:12825635..12825659 (25 bp)
AGTCCTCTGAGGTGACCGCCGGTGA
LOC_Os06g22100
OsAffx.15547.1.S1_at--1148--9251Chr06:12825637..12825661 (25 bp)
TCCTCTGAGGTGACCGCCGGTGACG
LOC_Os06g22100
OsAffx.15547.1.S1_at--108--6231Chr06:12825695..12825719 (25 bp)
GAGGCCATGTGGGATCCTACCAGCA
LOC_Os06g22100
OsAffx.15547.1.S1_at--903--4331Chr06:12825699..12825723 (25 bp)
CCATGTGGGATCCTACCAGCAGCAG
LOC_Os06g22100
OsAffx.15547.1.S1_at--625--4191Chr06:12825737..12825761 (25 bp)
CCGGACCAGGAGACAACTTCGGTAG
LOC_Os06g22100
OsAffx.15547.1.S1_at--204--5851Chr06:12825740..12825764 (25 bp)
GACCAGGAGACAACTTCGGTAGCTG
LOC_Os06g22100
Target Sequence 
GTCGAGTGCGTCTGCGAGTTCGCGCGCCGCCGCGGCCGCGGCGTCTCCGTGCTCAGCGGTGGCGGCGCCGTCGCCAACGT
CGCGCTCCGCCAGCCAGGCGCGTCGCCCCCGGGCAGCCTGGTCGCCACCATGCGCGGCCAGTTCGAGATCCTGTCCCTCA
CGGGCACCGTCCTCCCGCCGCCCGCGCCGCCCAGCGCCAGCGGCCTCACCGTCTTCCTCTCCGGCGGGCAGGGCCAGGTG
GTCGGCGGGAGCGTGGCCGGCCAGCTCATCGCCGCGGGGCCAGTCTTCCTCATGGCCGCCTCGTTCGCCAATGCCGTCTA
CGAGCGTCTGCCACTCGATGGGGAGGATCCGGAGGCAGAGGCTGCCGCCGCCACCCCTCCCGGCGATGCGGCGCAGCCAA
CCGGCCCACCACCACCGCAGCAGCAGCCCACAGCCTCGCAGTCCTCTGAGGTGACCGCCGGTGACGGCGGCGGCGGCGGC
GGTCTCGGCATGTATCTTGGAGGCCATGTGGGATCCTACCAGCAGCAGCAGCAGCAACTTCCCGGACCAGGAGACAACTT
CGGTAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis