Browse Element(s) Details


OsAffx.14951.1.S1_at

Description tigr:9633.m03136
TID=OsAffx.14951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3393011/11hypothetical protein
LOC_Os06g221201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33920OsAffx.14950.1.S1_at11/115+19944949..19946203pentatricopeptide, putative, expressed
LOC_Os05g33930OsAffx.14951.1.S1_at11/115+19948800..19949099hypothetical protein
LOC_Os05g33940Os.11867.2.S1_at11/115+19954831..19956502hsr203J, putative, expressed
LOC_Os05g33950OsAffx.27147.1.S1_at11/115+19959348..19960795hypothetical protein
LOC_Os05g33960Os.38339.1.S1_at11/115+19962044..19967604POT family protein, expressed
LOC_Os05g33970OsAffx.14952.1.S1_at9/115+19972195..19973981hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14951.1.S1_at--891--6071Chr05:19949042..19949066 (25 bp)
GAGTATGCTCGCGTGTCCAGCGACG
LOC_Os05g33930
OsAffx.14951.1.S1_at--530--4451Chr05:19948988..19949012 (25 bp)
GCCTACCAGTGCGTTTTCCAGGAAT
LOC_Os05g33930
OsAffx.14951.1.S1_at--874--3711Chr05:19948986..19949010 (25 bp)
CTACCAGTGCGTTTTCCAGGAATAC
LOC_Os05g33930
OsAffx.14951.1.S1_at--739--3451Chr05:19948982..19949006 (25 bp)
CAGTGCGTTTTCCAGGAATACGACA
LOC_Os05g33930
OsAffx.14951.1.S1_at--39--10631Chr05:19948973..19948997 (25 bp)
TTCCAGGAATACGACAGGGACGCGC
LOC_Os05g33930
OsAffx.14951.1.S1_at--1035--3892Chr08:23895493..23895512 (20 bp)
CTGGTGCTGCCCACCTGGGATGAGC
NONE
OsAffx.14951.1.S1_at--439--9151Chr05:19948912..19948936 (25 bp)
TGCCCACCTGGGATGAGCTGCTGTT
LOC_Os05g33930
OsAffx.14951.1.S1_at--650--10671Chr05:19948876..19948900 (25 bp)
TTCCTCCTCTTGCTTGTCTGCTGAA
LOC_Os05g33930
OsAffx.14951.1.S1_at--212--9593Chr08:23895546..23895567 (22 bp)
TCTTGCTTGTCTGCTGAAGCTCATC
NONE
OsAffx.14951.1.S1_at--276--2691Chr05:19948835..19948859 (25 bp)
AAGCTGAAGCTCTGCTGTTGTTTGT
LOC_Os05g33930
OsAffx.14951.1.S1_at--594--3851Chr05:19948832..19948856 (25 bp)
CTGAAGCTCTGCTGTTGTTTGTTTT
LOC_Os05g33930
Target Sequence 
GAGTATGCTCGCGTGTCCAGCGACGCCATGGATTCCGGCGCGCGCGTCGACGCCGCCTACCAGTGCGTTTTCCAGGAATA
CGACAGGGACGCGCTCAAGGCCAACATCACGGCCATGGGGCCCCTGGTGCTGCCCACCTGGGATGAGCTGCTGTTCGTGC
TCCTCCTTCCTCCTCTTGCTTGTCTGCTGAAGCTCATCACGGCCATGAAGCTGAAGCTCTGCTGTTGTTTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis