Browse Element(s) Details


Os.38339.1.S1_at

Description gb:AK110441.1
DB_XREF= gi:32995650
TID=Os.38339.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-166-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-D04, full insert sequence.
FL= gb:AK110441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3396011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33920OsAffx.14950.1.S1_at11/115+19944949..19946203pentatricopeptide, putative, expressed
LOC_Os05g33930OsAffx.14951.1.S1_at11/115+19948800..19949099hypothetical protein
LOC_Os05g33940Os.11867.2.S1_at11/115+19954831..19956502hsr203J, putative, expressed
LOC_Os05g33950OsAffx.27147.1.S1_at11/115+19959348..19960795hypothetical protein
LOC_Os05g33960Os.38339.1.S1_at11/115+19962044..19967604POT family protein, expressed
LOC_Os05g33970OsAffx.14952.1.S1_at9/115+19972195..19973981hypothetical protein
LOC_Os05g33980NANA5+19977879..19983840retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990Os.28943.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38339.1.S1_at--1065--7751Chr05:19962465..19962489 (25 bp)
GGTGCTCAACCTTGGATACTACCTC
LOC_Os05g33960
Os.38339.1.S1_at--571--3611Chr05:19962455..19962479 (25 bp)
CTTGGATACTACCTCGTCTGCTTCC
LOC_Os05g33960
Os.38339.1.S1_at--582--9071Chr05:19962437..19962461 (25 bp)
TGCTTCCACTTCTACACCATGAAGC
LOC_Os05g33960
Os.38339.1.S1_at--798--10571Chr05:19962428..19962452 (25 bp)
TTCTACACCATGAAGCCATTAGAGG
LOC_Os05g33960
Os.38339.1.S1_at--473--1471Chr05:19962382..19962406 (25 bp)
AGAAGGAGTGTGAGCTCTCCTCCGT
LOC_Os05g33960
Os.38339.1.S1_at--172--6091Chr05:19962273..19962297 (25 bp)
GAGTACGAAGTAATTAGCTGTGCAT
LOC_Os05g33960
Os.38339.1.S1_at--675--9731Chr05:19962263..19962287 (25 bp)
TAATTAGCTGTGCATGTGCATGCCA
LOC_Os05g33960
Os.38339.1.S1_at--774--3191Chr05:19962234..19962257 (24 bp)
CAATGGTTGCAAAATACAGCCTTTA
LOC_Os05g33960
Os.38339.1.S1_at--899--2431Chr05:19962224..19962248 (25 bp)
AAAATACAGCCTTTAGGGCATGTAC
LOC_Os05g33960
Os.38339.1.S1_at--1006--6091Chr05:19962192..19962216 (25 bp)
GAGTCAGATATGAGTCTCTATATTA
LOC_Os05g33960
Os.38339.1.S1_at--89--2015Chr06:23652558..23652581 (24 bp)
ACTAGCATCTTACAACAGTTAGAGA
NONE
Target Sequence 
GGTGCTCAACCTTGGATACTACCTCGTCTGCTTCCACTTCTACACCATGAAGCCATTAGAGGTGGCAGAGGAAGACGATG
ACGAGAAGGAGTGTGAGCTCTCCTCCGTCCACAAAAATGGCGNCCCCGGCGGGTTGGTGTGACGAGGTAGATTAGGATAA
TTTTATCAGGGTGGATAATGTTGTTAATTACGGAGTACGAAGTAATTAGCTGTGCATGTGCATGCCAAATACAATGGTTG
CAAAATACAGCCTTTAGGGCATGTACAAAAATAGAGTCAGATATGAGTCTCTATATTATTTAGAGACTAGCATCTTACAA
CAGTTAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis