Browse Element(s) Details


OsAffx.27147.1.S1_at

Description tigr:9633.m03138
TID=OsAffx.27147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3395011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33920OsAffx.14950.1.S1_at11/115+19944949..19946203pentatricopeptide, putative, expressed
LOC_Os05g33930OsAffx.14951.1.S1_at11/115+19948800..19949099hypothetical protein
LOC_Os05g33940Os.11867.2.S1_at11/115+19954831..19956502hsr203J, putative, expressed
LOC_Os05g33950OsAffx.27147.1.S1_at11/115+19959348..19960795hypothetical protein
LOC_Os05g33960Os.38339.1.S1_at11/115+19962044..19967604POT family protein, expressed
LOC_Os05g33970OsAffx.14952.1.S1_at9/115+19972195..19973981hypothetical protein
LOC_Os05g33980NANA5+19977879..19983840retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990Os.28943.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified
LOC_Os05g33990OsAffx.7292.1.S1_x_at1/115+19984462..19987663retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27147.1.S1_at--1070--2191Chr05:19959796..19959820 (25 bp)
ACAAACTTACTGGTCAGACTCATCA
LOC_Os05g33950
OsAffx.27147.1.S1_at--1003--211Chr05:19959772..19959796 (25 bp)
ATTTGGCTCTCATTCAAGCTGCTCG
LOC_Os05g33950
OsAffx.27147.1.S1_at--555--9091Chr05:19959753..19959777 (25 bp)
TGCTCGCCGTTCGTCGTTCAAGCTA
LOC_Os05g33950
OsAffx.27147.1.S1_at--219--3471Chr05:19959683..19959707 (25 bp)
CAGGTCTTCTCCTCTGATGAGGGCG
LOC_Os05g33950
OsAffx.27147.1.S1_at--477--4471Chr05:19959641..19959665 (25 bp)
GCCTGCGCCATTCTCCAGGAATGCG
LOC_Os05g33950
OsAffx.27147.1.S1_at--504--8211Chr05:19959624..19959648 (25 bp)
GGAATGCGAGCTCCACAGCTACTTA
LOC_Os05g33950
OsAffx.27147.1.S1_at--804--9711Chr05:19959525..19959549 (25 bp)
TCAAGTGGGAACATCCTCCACGCGG
LOC_Os05g33950
OsAffx.27147.1.S1_at--259--2951Chr05:19959472..19959496 (25 bp)
AAGGCGTCGCTGATGAGACTCCCGA
LOC_Os05g33950
OsAffx.27147.1.S1_at--846--771Chr05:19959431..19959455 (25 bp)
ATGTGCCTCGTGCTATCGCAGGCAA
LOC_Os05g33950
OsAffx.27147.1.S1_at--1059--10091Chr05:19959418..19959442 (25 bp)
TATCGCAGGCAACAAACGACGTCGG
LOC_Os05g33950
OsAffx.27147.1.S1_at--179--2371Chr05:19959405..19959429 (25 bp)
AAACGACGTCGGCAGGACGAGCCAT
LOC_Os05g33950
Target Sequence 
ACAAACTTACTGGTCAGACTCATCATTTGGCTCTCATTCAAGCTGCTCGCCGTTCGTCGTTCAAGCTACTCACCGCGCAC
CTGCCAGAGACCTCTCCTCGGACGCTCACCGTCCAGGTCTTCTCCTCTGATGAGGGCGGGTGGGACCCTCCTCTCGCCTG
CGCCATTCTCCAGGAATGCGAGCTCCACAGCTACTTACGCCAAGCCCGTCGTCCTGCGCGGCGCCGTCCACTGGCTCTGC
CTCACATACTCGCGTCACCGAATCCTCGTCCTCAAGTGGGAACATCCTCCACGCGGACGCTGCGACGTCGCTTCGCCGCC
GCTGAAGGCGTCGCTGATGAGACTCCCGACGCCGTGCCACACGACATGTGCCTCGTGCTATCGCAGGCAACAAACGACGT
CGGCAGGACGAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis